Contig 001975:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS117B06Sequence597001975 (2)ref|XP_004239277.1|5e-13PREDICTED: nucleolin [Solanum lycopersicum]
JMFS117B08Sequence611001975 (2)ref|XP_004239277.1|2e-13PREDICTED: nucleolin [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS117B08+ GGAATGCTGCT
                      ____________________________________________________________
consensus GGAATGCTGCT
 
. : . : . : . : . : . :
JMFS117B06+ ATAGTAATCAT
JMFS117B08+ CCACCGGTGCCGCACCGCCCCAAACAACCTTAGGCGCAGCCGTAGTAATATAGTAATCAT
                      ____________________________________________________________
consensus CCACCGGTGCCGCACCGCCCCAAACAACCTTAGGCGCAGCCGTAGTAATATAGTAATCAT
 
. : . : . : . : . : . :
JMFS117B06+ CGTCACTTTCGTCATCCACATCGGCCCACGATTTCGTAGTCAGCGGCGCCGGAGCCCAGA
JMFS117B08+ CGTCACTTTCGTCATCCACATCGGCCCACGATTTCGTAGTCAGCGGCGCCGGAGCCCAGA
                      ____________________________________________________________
consensus CGTCACTTTCGTCATCCACATCGGCCCACGATTTCGTAGTCAGCGGCGCCGGAGCCCAGA
 
. : . : . : . : . : . :
JMFS117B06+ AAACCTGCGGCTGAGGCTCCTGCTTCGACGAACCGGAAGAAACCTTACTCTTGGAATCCT
JMFS117B08+ AAACCTGCGGCTGAGGCTCCTGCTTCGACGAACCGGAAGAAACCTTACTCTTGGAATCCT
                      ____________________________________________________________
consensus AAACCTGCGGCTGAGGCTCCTGCTTCGACGAACCGGAAGAAACCTTACTCTTGGAATCCT
 
. : . : . : . : . : . :
JMFS117B06+ TGCTGGACTTCTTCTTCTTCCTGAGAGCTCCGAGCGCCGCGAAACCGTTAGTGCTGTTAA
JMFS117B08+ TGCTGGACTTCTTCTTCTTCCTGAGAGCTCCGAGCGCCGCGAAACCGTTAGTGCTGTTAA
                      ____________________________________________________________
consensus TGCTGGACTTCTTCTTCTTCCTGAGAGCTCCGAGCGCCGCGAAACCGTTAGTGCTGTTAA
 
. : . : . : . : . : . :
JMFS117B06+ TCACCAACTGATCATCCTTCCTGTTTCCACCACCCACCATTTTTTTTCCTCCTTTCACTC
JMFS117B08+ TCACCAACTGATCATCCTTCCTGTTTCCACCACCCACCATTTTTTTTCCTCCTTTCACTC
                      ____________________________________________________________
consensus TCACCAACTGATCATCCTTCCTGTTTCCACCACCCACCATTTTTTTTCCTCCTTTCACTC
 
. : . : . : . : . : . :
JMFS117B06+ AGAATCTCAACGCCTCCACCAACACAGCTCGCCGCAGTCGACAGATATCTATATCTACGC
JMFS117B08+ AGAATCTCAACGCCTCCACCAACACAGCTCGCCGCAGTCGACAGATATCTATATCTACGC
                      ____________________________________________________________
consensus AGAATCTCAACGCCTCCACCAACACAGCTCGCCGCAGTCGACAGATATCTATATCTACGC
 
. : . : . : . : . : . :
JMFS117B06+ GATTCAATCCACGGAGAAACAATCCCTGATTGTGGAATGATCGGATGGAAATCGAAGATG
JMFS117B08+ GATTCAATCCACGGAGAAACAATCCCTGATTGTGGAATGATCGGATGGAAATCGAAGATG
                      ____________________________________________________________
consensus GATTCAATCCACGGAGAAACAATCCCTGATTGTGGAATGATCGGATGGAAATCGAAGATG
 
. : . : . : . : . : . :
JMFS117B06+ ACAGATTTTCAGGGAAATTCCGGCGAAACAGGAATTTCCGATGAATTGAAGGAAAATGTT
JMFS117B08+ ACAGATTTTCAGGGAAATTCCGGCGAAACAGGAATTTCCGATGAATTGAAGGAAAATGTT
                      ____________________________________________________________
consensus ACAGATTTTCAGGGAAATTCCGGCGAAACAGGAATTTCCGATGAATTGAAGGAAAATGTT
 
. : . : . : . : . : . :
JMFS117B06+ GAATTGTGGATTGGATGGCGGTTGTAATTTTGGGAGAGAATAGAATCTGTGAGGGTTATA
JMFS117B08+ GAATTGTGGATTGGATGGCGGTTGTAATTTTGGGAGAGAATAGAATCTGTGAGGGTTATA
                      ____________________________________________________________
consensus GAATTGTGGATTGGATGGCGGTTGTAATTTTGGGAGAGAATAGAATCTGTGAGGGTTATA
 
. : . : . : . : . : . :
JMFS117B06+ CAAAGGAGAACAGTCTGTAATTATTAGGGTTTGATAGAGAGTCGAGTCGGGGAAGATGGA
JMFS117B08+ CAAAGGAGAACAGTCTGTAATTATTAGGGTTTGATAGAGAGTCGAGTCGGGGAAGATGGA
                      ____________________________________________________________
consensus CAAAGGAGAACAGTCTGTAATTATTAGGGTTTGATAGAGAGTCGAGTCGGGGAAGATGGA