Contig 001974:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS116D03Sequence361001974 (5)gb|KDO55085.1|6e-18hypothetical protein CISIN_1g0026781mg, partial [Citrus sinensis]
JMFS119D08Sequence627001974 (5)gb|KJB80952.1|1e-118hypothetical protein B456_013G123000 [Gossypium raimondii]
JMFS133H05Sequence641001974 (5)gb|KJB80952.1|2e-96hypothetical protein B456_013G123000 [Gossypium raimondii]
JMFS134A12Sequence536001974 (5)gb|KJB80952.1|5e-92hypothetical protein B456_013G123000 [Gossypium raimondii]
JMSF017D24Sequence227001974 (5)emb|CDM82902.1|5e-14unnamed protein product [Triticum aestivum]744022511ref|XP_009791157.1|2e-116PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Ni

Alignment

This contig is upended


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JMFS134A12+                 TGTGCAGCACTACACCTTTAACAAGCCCAGGGGAGCGATGGAGACTAGATCTCA
                      ____________________________________________________________
consensus                   TGTGCAGCACTACACCTTTAACAAGCCCAGGGGAGCGATGGAGACTAGATCTCA
 
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JMFS134A12+           AGAGACTCCACCTTATCTAAAGGTAGGGAGCTATAAAACTCATCAACATCAGCAAATTCA
                      ____________________________________________________________
consensus             AGAGACTCCACCTTATCTAAAGGTAGGGAGCTATAAAACTCATCAACATCAGCAAATTCA
 
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JMFS134A12+           TCAAAGTCCTCCTGATTGCGTTCCACATAATCATCCAGGAAATCTTTAACATCATTGACT
                      ____________________________________________________________
consensus             TCAAAGTCCTCCTGATTGCGTTCCACATAATCATCCAGGAAATCTTTAACATCATTGACT
 
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JMFS134A12+           TCGTCTGTGCTCAACTCATCATTATCAAGTAACCTCAAGATCAGCTCTAGTTTCATGATA
                      ____________________________________________________________
consensus             TCGTCTGTGCTCAACTCATCATTATCAAGTAACCTCAAGATCAGCTCTAGTTTCATGATA
 
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JMFS134A12+           TGGGCCTTGTGCCGAACAATGGATGTTTCCAAATGTGTCAATCTCGGGGGCCTTGTTTTC
JMFS119D08+                CTTGTGCCGAACAATGGATGTTTCCAAATGTGTCAATCTCGGGGGCCTTGTTTTC
                      ____________________________________________________________
consensus             TGGGCCTTGTGCCGAACAATGGATGTTTCCAAATGTGTCAATCTCGGGGGCCTTGTTTTC
 
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JMFS134A12+           CCTTTCTTAACAGTCAATCCCTCCAGTTCAGCCTCAAAACTATCAATTTGATTTTCCAGC
JMFS119D08+           CCTTTCTTAACAGTCAATCCCTCCAGTTCAGCCTCAAAACTATCAATTTGATTTTCCAGC
JMFS133H05+                                            TCAAAACTATCAATTTGATTTTCCAGC
                      ____________________________________________________________
consensus             CCTTTCTTAACAGTCAATCCCTCCAGTTCAGCCTCAAAACTATCAATTTGATTTTCCAGC
 
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JMFS134A12+           TCCCCAACCACATTATTCAACCAATCTCTTGTCTCTGATTTAGCCTTTTCCTTCGGATCC
JMFS119D08+           TCCCCAACCACATTATTCAACCAATCTCTTGTCTCTGATTTAGCCTTTTCCTTCGGATCC
JMFS133H05+           TCCCCAACCACATTATTCAACCAATCTCTTGTCTCTGATTTAGCCTTTTCCTTCGGATCC
                      ____________________________________________________________
consensus             TCCCCAACCACATTATTCAACCAATCTCTTGTCTCTGATTTAGCCTTTTCCTTCGGATCC
 
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JMFS134A12+           GTCTTTGGTTGTTGGCCCAAACCTTCTTTTGAAAATGCTTTGGTCTTTGTTTCTTTCTCA
JMFS119D08+           GTCTTTGGTTGTTGGCCCAAACCTTCTTTTGAAAATGCTTTGGTCTTTGTTTCTTTCTCA
JMFS133H05+           GTCTTTGGTTGTTGGCCCAAACCTTCTTTTGAAAATGCTTTGGTCTTTGTTTCTTTCTCA
                      ____________________________________________________________
consensus             GTCTTTGGTTGTTGGCCCAAACCTTCTTTTGAAAATGCTTTGGTCTTTGTTTCTTTCTCA
 
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JMFS134A12+           CATATTTTAAATCGTTCCATTTCACGCTCAATGACCTTGCGAGCATCCATCAGAGCCTGC
JMFS119D08+           CATATTTTAAATCGTTCCATTTCACGCTCAATGACCTTGCGAGCATCCATCAGAGCCTGC
JMFS133H05+           CATATTTTAAATCGTTCCATTTCACGCTCAATGACCTTGCGAGCATCCATCAGAGCCTGC
                      ____________________________________________________________
consensus             CATATTTTAAATCGTTCCATTTCACGCTCAATGACCTTGCGAGCATCCATCAGAGCCTGC
 
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JMFS134A12+           TC                                                          
JMFS119D08+           TCGTAAGAGGCACTGACCTTCTTATCCTTGATTTCACTGGACTGAATCCATGTCTTAATT
JMFS133H05+           TCGTAAGAGGCACTGACCTTCTTATCCTTGATTTCACTGGACTGAATCCATGTCTTAATT
                      ____________________________________________________________
consensus             TCGTAAGAGGCACTGACCTTCTTATCCTTGATTTCACTGGACTGAATCCATGTCTTAATT
 
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JMFS119D08+           TGGTCTCTATACCTCTGGAGCTTCTTTATTTCCTTCTTCAAATCTGCTTCAAACTTTTCC
JMFS133H05+           TGGTCTCTATACCTCTGGAGCTTCTTTATTTCCTTCTTCAAATCTGCTTCAAACTTTTCC
JMFS116D03+                                                                      C
                      ____________________________________________________________
consensus             TGGTCTCTATACCTCTGGAGCTTCTTTATTTCCTTCTTCAAATCTGCTTCAAACTTTTCC
 
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JMFS119D08+           TTCTGGTTCGCATTATCAGTGTCGTAAACCTTGTTCCAAATGCTATCGAAGACGTCGACG
JMSF017D24+                                 CGTAAACCTTGTTCCAAATGCTGTCGAATACATCGACG
JMFS133H05+           TTCTGGTTCGCATTATCAGTGTCGTAAACCTTGTTCCAAATGCTATCGAAGACGTCGACG
JMFS116D03+           TTCTGGTTCGCATTATCAGTGTCGTAAACCTTGTTCCAAATGCTATCGAAGACGTCGACG
                      ____________________________________________________________
consensus             TTCTGGTTCGCATTATCAGTGTCGTAAACCTTGTTCCAAATGCTATCGAAGACGTCGACG
 
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JMFS119D08+           CCCTCTTGAACCTTCTTCAACACCCGGTCGATCTCGCCCTGAAGCTTTCGACTAGCTCCC
JMSF017D24+           CCCTCTTGAACCTTCTTCAACACTCGATCAATTTCGCCCTGAAGCTTTCGACTGGCTCCC
JMFS133H05+           CCCTCTTGAACCTTCTTCAACACCCGGTCGATCTCGCCCTGAAGCTTTCGACTAGCTCCC
JMFS116D03+           CCCTCTTGAACCTTCTTCAACACCCGGTCGATCTCGCCCTGAAGCTTTCGACTAGCTCCC
                      ____________________________________________________________
consensus             CCCTCTTGAACCTTCTTCAACACCCGGTCGATCTCGCCCTGAAGCTTTCGACTAGCTCCC
 
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JMFS119D08+           ATTG                                                        
JMSF017D24+           ATTG                                                        
JMFS133H05+           ATTGAAGACGATCAAGTTAACAGCCTTCAGCTACTTATCAAAATTGAAAACGATAGCGAT
JMFS116D03+           ATTGAAGACGATCAAGTTAACAGCCTTCAGCTACTTATCAAAATTGAAAACGATAGCGAT
                      ____________________________________________________________
consensus             ATTGAAGACGATCAAGTTAACAGCCTTCAGCTACTTATCAAAATTGAAAACGATAGCGAT
 
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JMFS133H05+           CATTCAACACACTCCTTCCCAACACCTTTTAGGGTTTTAGGATTTTGCTCTCTTTAGAAA
JMFS116D03+           CATTCAACACACTCCTTCCCAACACCTTTTAGGGTTTTAGGATTTTGCTCTCTTTAGAAA
                      ____________________________________________________________
consensus             CATTCAACACACTCCTTCCCAACACCTTTTAGGGTTTTAGGATTTTGCTCTCTTTAGAAA
 
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JMFS133H05+           TTCCGCGATCGACTGTCTCTCTGGTAACGGTTTTGCAGAATTGCAGAGTTCCTGCTCTCG
JMFS116D03+           TTCCGCGATCGACTGTCTCTCTGGTAACGGTTTTGCAGAATTGCAGAGTTCCTGCTCTCG
                      ____________________________________________________________
consensus             TTCCGCGATCGACTGTCTCTCTGGTAACGGTTTTGCAGAATTGCAGAGTTCCTGCTCTCG
 
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JMFS133H05+           TCACTGCGCAGTAG                                              
JMFS116D03+           TCACTGCGCAGTAGTCTCGCCGTCAGAATGTACCAGTTAATCCAATACTAGTAAAGTAGT
                      ____________________________________________________________
consensus             TCACTGCGCAGTAGTCTCGCCGTCAGAATGTACCAGTTAATCCAATACTAGTAAAGTAGT