Contig 001973:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160F11+                                                 GGTTTAGGTTTTGCTTCGGGAG
                      ____________________________________________________________
consensus                                                   GGTTTAGGTTTTGCTTCGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160F11+           GAATAGAAGGTGGAGGAGGTGGAGGAGGTTTAGGTTTAGGCTTTGCCACGGAAGGTGCAG
                      ____________________________________________________________
consensus             GAATAGAAGGTGGAGGAGGTGGAGGAGGTTTAGGTTTAGGCTTTGCCACGGAAGGTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+                           AGGTTTAGGCTTTGCCACGGCAGGTGCGGGAGAAGGGGGTGGAA
JMFS160F11+           GAGGAGGGGGTGGAGAAGGTTTAGGCTTTGCCACGGCAGGTGCGGGAGGAGGGGGTGGAA
                      ____________________________________________________________
consensus             GAGGAGGGGGTGGAGAAGGTTTAGGCTTTGCCACGGCAGGTGCGGGAGGAGGGGGTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           GAGGTTTAGGCTTTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGGAGGAGGTTTAGGTT
JMFS160F11+           GAGGTTTAGGCTTTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGGAGGAGGTTTAGGTT
                      ____________________________________________________________
consensus             GAGGTTTAGGCTTTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGGAGGAGGTTTAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           TAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGCTTTGCTTCGG
JMFS160F11+           TAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGCTTTGCTTCGG
JMFS114B10+                                                   AGGTTTAGGCTTTGCTTCGG
                      ____________________________________________________________
consensus             TAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGCTTTGCTTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           GAGGAATAGAAGGTGGAGGAGGTGGGGGAGGTTTAGGTTTAGGCTTTTCCACGGAAGGTG
JMFS160F11+           GAGGAATAGAAGGTGGAGGAGGTGGGGGAGGTTTAGGTTTAGGCTTTTCCACGGAAGGTG
JMFS114B10+           GAGGAATAGAAGGTGGAGGAGGTGGGGGAGGTTTAGGTTTAGGCTTTTCCACGGAAGGTG
                      ____________________________________________________________
consensus             GAGGAATAGAAGGTGGAGGAGGTGGGGGAGGTTTAGGTTTAGGCTTTTCCACGGAAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           CGGGAGGAGGGGGTGGAGGAGGTTTAGGTTTTGCTTCGGGAGGAATAGAAGGTGGAGGAG
JMFS160F11+           CGGGAGGAGGGGGTGGAGGAGGTTTAGGTTTTGCTTCGGGAGGAATAGAAGGTGGAGGAG
JMFS114B10+           CGGGAGGAGGGGGTGGAGGAGGTTTAGGTTTTGCTTCGGGAGGAATAGAAGGTGGAGGAG
                      ____________________________________________________________
consensus             CGGGAGGAGGGGGTGGAGGAGGTTTAGGTTTTGCTTCGGGAGGAATAGAAGGTGGAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           GTTTAGGTTTAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGTT
JMFS160F11+           GTTTAGGTTTAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGTT
JMFS114B10+           GTTTAGGTTATGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGTT
                      ____________________________________________________________
consensus             GTTTAGGTTTAGGCTTTTCCACGGAAGGTGCGGGAGGAGGGGGTGGAGGAGGTTTAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036F05+           TTGCTTCGGGAGGAATAGAAGGTGGAGGAGGT                            
JMFS160F11+           TTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGAAGGAGGTTTAGGTTTAGGCTTTGCCA
JMFS114B10+           TTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGAAGGAGGTTTAGGTTTAGGCTTTGCCA
                      ____________________________________________________________
consensus             TTGCTTCGGGAGGAATAGAAGGTGGAGGAGGTGAAGGAGGTTTAGGTTTAGGCTTTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160F11+           CGGAAGGTGCGGGAGGAGGGGGTGGAGAAGGTTTAGGCTTTGCCACGGTAGGTGCGGGAG
JMFS114B10+           CGGAAGGTGCGGGAGGAGGGGGTGGAGAAGGTTTAGGCTTTGCCACGGTAGGTGCGGGAG
                      ____________________________________________________________
consensus             CGGAAGGTGCGGGAGGAGGGGGTGGAGAAGGTTTAGGCTTTGCCACGGTAGGTGCGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160F11+           GAGGGGGTGGAGGAGGTTTAGG                                      
JMFS114B10+           GAGGGGGTGGAGGAGGTTTAGGCTTTGCTTCGGGAGGAGGAGAAGGTGGAGGAGGTTTAG
                      ____________________________________________________________
consensus             GAGGGGGTGGAGGAGGTTTAGGCTTTGCTTCGGGAGGAGGAGAAGGTGGAGGAGGTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114B10+           GTTTAGGCTTTGCTGCGGGTTGCATTTCAAAACCTTGTGTCAAATTATCACTTACACTCT
                      ____________________________________________________________
consensus             GTTTAGGCTTTGCTGCGGGTTGCATTTCAAAACCTTGTGTCAAATTATCACTTACACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114B10+           CACCATTCTCCCCGGTAACCACTATAAATGAAGATCCAACAAGCAGCACAATAACCCAGA
                      ____________________________________________________________
consensus             CACCATTCTCCCCGGTAACCACTATAAATGAAGATCCAACAAGCAGCACAATAACCCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114B10+           GGTTAGCCAACACCAGAAAACCCTTTGTTCCCTGGAAAATACCCATCTTTGCTTGGCTAC
                      ____________________________________________________________
consensus             GGTTAGCCAACACCAGAAAACCCTTTGTTCCCTGGAAAATACCCATCTTTGCTTGGCTAC