Contig 001971:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS052C07Sequence472001971 (5)ref|XP_006341903.1|7e-31PREDICTED: calmodulin-binding transcription activator 4-like isoform X3 [Solanu
JMFS111C12Sequence627001971 (5)emb|CDP13355.1|1e-72unnamed protein product [Coffea canephora]
JMFS111D10Sequence626001971 (5)emb|CDP13355.1|3e-73unnamed protein product [Coffea canephora]
JMFS129B03Sequence617001971 (5)emb|CDP13355.1|4e-70unnamed protein product [Coffea canephora]
JMFS165E02Sequence615001971 (5)emb|CDP13355.1|9e-71unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS111D10+                                          TCTGTAGTGAACCAGAACAATATGCTCAT
JMFS165E02+                                                  GAACCAGAACAATATGCTCAT
JMFS129B03+                                                      CAGAACAATATGCTCAT
JMFS111C12+                                              TAGTGAACCAGAACAATATGCTCAT
                      ____________________________________________________________
consensus                                            TCTGTAGTGAACCAGAACAATATGCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111D10+           ATGCCGGATCCAACATCCAATAGCTGCGCCTCTGAAAATTAGGATTCTGCTCTCCATGTG
JMFS165E02+           ATGCGGGATCCAACATCCAATAGCTGCGCCTCTGAAAATTAGGATTCTGCTCTCCATGTG
JMFS129B03+           ATGCGGGATCCAACATCCAATAGCTGCGCCTCTGAAAATTAGGATTCTGCTCTCCATGTG
JMFS111C12+           ATGCCGGATCCAACATCCAATAGCTGCGCCTCTGAAAATTAGGATTCTGCTCTCCATGTG
                      ____________________________________________________________
consensus             ATGCGGGATCCAACATCCAATAGCTGCGCCTCTGAAAATTAGGATTCTGCTCTCCATGTG
 
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JMFS111D10+           CATAATAACAATTGAGAGCTTCAGCACTTCCAACCTTAAGCCTTTCATGTGCTTCCCCCA
JMFS165E02+           CATAATAACAATTGAGAGCTTCAGCACTTCCAACCTTAAGCCTTTCATGTGCTTCCCCCA
JMFS129B03+           CATAATAACAATTGAGAGCTTCAGCACTTCCAACCTTAAGCCTTTCATGTGCTTCCCCCA
JMFS052C07+                                CAGCACTTCCAACGTTAAGCCGTTCATGTGCTTCCCCCA
JMFS111C12+           CATAATAACAATTGAGAGCTTCAGCACTTCCAACCTTAAGCCTTTCATGTGCTTCCCCCA
                      ____________________________________________________________
consensus             CATAATAACAATTGAGAGCTTCAGCACTTCCAACCTTAAGCCTTTCATGTGCTTCCCCCA
 
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JMFS111D10+           CAGTTCTCCCATCTCTCTTTCTTCTCCAACTATGACCATCTTTACGGAAAAATCTTAGGA
JMFS165E02+           CAGTTCTCCCATCTCTCTTTCTTCTCCAACTATGACCATCTTTACGGAAAAATCTTAGGA
JMFS129B03+           CAGTTCTCCCATCTCTCTTTCTTCTCCAACTATGACCATCTTTACGGAAAAATCTTAGGA
JMFS052C07+           CAGTTCTCCCATCTCTCTTTATTAGCCAACTAGGACCATCTGTACGTAAAAATCTGTGGA
JMFS111C12+           CAGTTCTCCCATCTCTCTTTCTTCTCCAACTATGACCATCTTTACGGAAAAATCTTAGGA
                      ____________________________________________________________
consensus             CAGTTCTCCCATCTCTCTTTCTTCTCCAACTATGACCATCTTTACGGAAAAATCTTAGGA
 
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JMFS111D10+           CTCTCTTGTTGAAAAGAAACAAAGATCCACTTCCTGGCTTTTGAGGGGGTTCATGGGCAA
JMFS165E02+           CTCTCTTGTTGAAAAGAAACAAAGATCCACTTCCTGGCTTTTGAGGGGGTTCATGGGCAA
JMFS129B03+           CTCTCTTGTTGAAAAGAAACAAAGATCCACTTCCTGGCTTTTGAGGGGGTTCATGGGCAA
JMFS052C07+           CTCTGTTGTTGAAAAGAAACAAAGATCCAATTCGTGGCATGCGAGGGGGTTCATGGGCAA
JMFS111C12+           CTCTCTTGTTGAAAAGAAACAAAGATCCACTTCCTGGCTTTTGAGGGGGTTCATGGGCAA
                      ____________________________________________________________
consensus             CTCTCTTGTTGAAAAGAAACAAAGATCCACTTCCTGGCTTTTGAGGGGGTTCATGGGCAA
 
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JMFS111D10+           TCTGGTGGTTCTCATGATTCTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGAC
JMFS165E02+           TCTGGTGGTTCTCATGATTCTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGAC
JMFS129B03+           TCTGGTGGTTCTCATGATTCTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGAC
JMFS052C07+           TGAGGTGGTTATCATGATTTTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGTC
JMFS111C12+           TCTGGTGGTTCTCATGATTCTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGAC
                      ____________________________________________________________
consensus             TCTGGTGGTTCTCATGATTCTGCAATATGAAGAGCACTTCAGCAGGTTTCAACCATCGAC
 
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JMFS111D10+           CTTGAGCTTCTCGAATCAAGTCACTGAAATTATATCCCGCTTCCGTCATGATTCTACTAA
JMFS165E02+           CTTGAGCTTCTCGAATCAAGTCACTGAAATTATATCCCGCTTCCGTCATGATTCTACTAA
JMFS129B03+           CTTGAGCTTCTCGAATCAAGTCACTGAAATTATATCCCGCTTCCGTCATGATTCTACTAA
JMFS052C07+           CATGAGCTTCTAGAATCAAGACACTGCCATTATATACCGCATCCGTCATGATTTTAATAA
JMFS111C12+           CTTGAGCTTCTCGAATCAAGTCACTGAAATTATATCCCGCTTCCGTCATGATTCTACTAA
                      ____________________________________________________________
consensus             CTTGAGCTTCTCGAATCAAGTCACTGAAATTATATCCCGCTTCCGTCATGATTCTACTAA
 
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JMFS111D10+           ACAAAAATATCAATCATGCTGAAAAACCATAGCGAATTGCAGCGAGGTCCTCTGTTTGTC
JMFS165E02+           ACAAAAATATCAATCATGCTGAAAAACCATAGCGAATTGCAGCGAGGTCCTCTGTTTGTC
JMFS129B03+           ACAAAAATATCAATCATGCTGAAAAACCATAGCGAATTGCAGCGAGGTCCTCTGTTTGTC
JMFS052C07+           ACAAAAATATCAATCATGCTGAAAAACCAGAGAGAATTGCAGCGAGGTCGTCTGTCNGTC
JMFS111C12+           ACAAAAATATCAATCATGCTGAAAAACCATAGCGAATTGCAGCGAGGTCCTCTGTTTGTC
                      ____________________________________________________________
consensus             ACAAAAATATCAATCATGCTGAAAAACCATAGCGAATTGCAGCGAGGTCCTCTGTTTGTC
 
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JMFS111D10+           ATTCATTCAAATTGAGCCCGGATCCCATACTTCCTAAGCAGTGAAATCACGAAAGAGAGC
JMFS165E02+           ATTCATTCAAATTGAGCCCGGATCCCATACTTCCTAAGCAGTGAAATCACGAAAGAGAGC
JMFS129B03+           ATTCATTCAAATTGAGCCCGGATCCCATACTTCCTAAGCAGTGAAATCACGAAAGAGAGC
JMFS052C07+           ATTCATTCAAATTGAGCCCGGATCCCATACTTCGTAAGCAGTTATATCACGAAAGTGAGC
JMFS111C12+           ATTCATTCAAATTGAGCCCGGATCCCATACTTCCTAAGCAGTGAAATCACGAAAGAGAGC
                      ____________________________________________________________
consensus             ATTCATTCAAATTGAGCCCGGATCCCATACTTCCTAAGCAGTGAAATCACGAAAGAGAGC
 
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JMFS111D10+           AGTGATTAAGTACGGCAGCTCCAAAGACGTCGGCGGGCGCCGGAAATTTGAATTTACAAA
JMFS165E02+           AGTGATTAAGTACGGCAGCTCCAAAGACGTCGGCGGGCGCCGGAAATTTGAATTTACAAA
JMFS129B03+           AGTGATTAAGTACGGCAGCTCCAAAGACGTCGGCGGGCGCCGGAAATTTGAATTTACAAA
JMFS052C07+           AGTGATTAAG                                                  
JMFS111C12+           AGTGATTAAGTACGGCAGCTCCAAAGACGTCGGCGGGCGCCGGAAATTTGAATTTACAAA
                      ____________________________________________________________
consensus             AGTGATTAAGTACGGCAGCTCCAAAGACGTCGGCGGGCGCCGGAAATTTGAATTTACAAA
 
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JMFS111D10+           CGGCGAAGTTGGGGAACGACTTCTAGAGAGAGAAAGTCAATCCAGTAAATCTGT      
JMFS165E02+           CGGCGAAGTTGGGGAACGACTTCTAGAGAGAGAAAGTCAATCCAGTAAATCTGT      
JMFS129B03+           CGGCGAAGTTGGGGAACGACTTCTAGAGAGAGAAAGTCAATCCAGTAAATCTGT      
JMFS111C12+           CGGCGAAGTTGGGGAACGACTTCTAGAGAGAGAAAGTCAATCCAGTAAATCTGTATGTCT
                      ____________________________________________________________
consensus             CGGCGAAGTTGGGGAACGACTTCTAGAGAGAGAAAGTCAATCCAGTAAATCTGTATGTCT