Contig 001967:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS017D12+                                                                GCAATAA
                      ____________________________________________________________
consensus                                                                  GCAATAA
 
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JMFS017D12+           ACCACTAAAAGAATTATTCTTTAAACTCAGCACAGTCAAAGCAGGAAGTGAAGCTAACCA
                      ____________________________________________________________
consensus             ACCACTAAAAGAATTATTCTTTAAACTCAGCACAGTCAAAGCAGGAAGTGAAGCTAACCA
 
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JMFS017D12+           ATCAGGAACCTGACCTGTGAACCTGTTATTATCCAACACAAGTGTCTGAAGCCCCTTCAA
JMFS104B09+                                                            AGCCCCTTCAA
                      ____________________________________________________________
consensus             ATCAGGAACCTGACCTGTGAACCTGTTATTATCCAACACAAGTGTCTGAAGCCCCTTCAA
 
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JMFS017D12+           AGATGAAATCTCCAATGGAAGGCTGCCATTAAAGGAGTTTGAGCTTATATTCACAATCTC
JMFS104B09+           AGATGAAATCTCCAATGGAAGGCTGCCATTAAAGGAGTTTGAGCTTATATTCACAATCTC
                      ____________________________________________________________
consensus             AGATGAAATCTCCAATGGAAGGCTGCCATTAAAGGAGTTTGAGCTTATATTCACAATCTC
 
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JMFS017D12+           CAAAGAAGACAAAAGCCCAATACTTGGAGGCAAAGGGCCTCTCAGACCCAAAGAAACTAA
JMFS104B09+           CAAAGAAGACAAAAGCCCAATACTTGGAGGCAAAGGGCCTCTCAGACCCAAAGAAACTAA
                      ____________________________________________________________
consensus             CAAAGAAGACAAAAGCCCAATACTTGGAGGCAAAGGGCCTCTCAGACCCAAAGAAACTAA
 
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JMFS017D12+           AGAGAGGACCTTCAAGTTAGGGAGGCTAGCAAGATTGGAGAAGAGGAAAGAAGTGGAAAT
JMFS104B09+           AGAGAGGACCTTCAAGTTAGGGAGGCTAGCAAGATTGGAGAAGAGGAAAGAAGTGGAAAT
                      ____________________________________________________________
consensus             AGAGAGGACCTTCAAGTTAGGGAGGCTAGCAAGATTGGAGAAGAGGAAAGAAGTGGAAAT
 
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JMFS017D12+           CTCTTGAGGAAATTGAGGGAAAACCCCATTCCCAGCCACATGGAGCTGTGTTATGTTATC
JMFS112F07+                             GAAAACCCCATTCCCAGCCACATGGAGCTGTGTTATGTTATC
JMFS104B09+           CTCTTGAGGAAATTGAGGGAAAACCCCATTCCCAGCCACATGGAGCTGTGTTATGTTATC
                      ____________________________________________________________
consensus             CTCTTGAGGAAATTGAGGGAAAACCCCATTCCCAGCCACATGGAGCTGTGTTATGTTATC
 
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JMFS017D12+           TTCATAGCACACCAGTGTTAGGATTGGGAGTGGCTCAGTGTTGCAGAAATCTGAGTTCTC
JMFS112F07+           TTCATAGCACACCAGTGTTAGGATTGGGAGTGGCTCAGTGTTGCAGAAATCTGAGTTCTC
JMFS104B09+           TTCATAGCACACCAGTGTTAGGATTGGGAGTGGCTCAGTGTTGCAGAAATCTGAGTTCTC
                      ____________________________________________________________
consensus             TTCATAGCACACCAGTGTTAGGATTGGGAGTGGCTCAGTGTTGCAGAAATCTGAGTTCTC
 
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JMFS017D12+           ACTCCAACTGCTTAGCTCCACTGGGAAGCTCAGCTCCTGTTTGATCCTCTGAATGGCTTG
JMFS112F07+           ACTCCAACTGCTTAGCTCCACTGGGAAGCTCAGCTCCTGTTTGATCCTCTGAATGGCTTG
JMFS104B09+           ACTCCAACTGCTTAGCTCCACTGGGAAGCTCAGCTCCTGTTTGATCCTCTGAATGGCTTG
                      ____________________________________________________________
consensus             ACTCCAACTGCTTAGCTCCACTGGGAAGCTCAGCTCCTGTTTGATCCTCTGAATGGCTTG
 
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JMFS017D12+           GAACTGGGAAGGTGGGAGCATTTGCTCTGAGTAATCCACCATGGCAAAAAACAAGAAAAG
JMFS112F07+           GAACTGGGAAGGTGGGAGCATTTGCTCTGAGTAATCCACCATGGCAAAAAACAAGAAAAG
JMFS104B09+           GAACTGGGAAGGTGGGAGCATTTGCTCTGAGTAATCCACCATGGCAAAAAACAAGAAAAG
                      ____________________________________________________________
consensus             GAACTGGGAAGGTGGGAGCATTTGCTCTGAGTAATCCACCATGGCAAAAAACAAGAAAAG
 
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JMFS017D12+           TAATAAGAGCTTTAATGGCTTCTTCTTCTTCTTCTTCTTCAGCACCTCTGCCATAGCTAA
JMFS112F07+           TAATAAGAGCTTTAATGGCTTCTTCTTCTTCTTCTTCTTCAGCACCTCTGCCATAGCTAA
JMFS104B09+           TAATAAGAGCTTTAATGGCTTCTTCTTCTTCTTCTTCTTCAGCACCTCTGCCATAGCTAA
                      ____________________________________________________________
consensus             TAATAAGAGCTTTAATGGCTTCTTCTTCTTCTTCTTCTTCAGCACCTCTGCCATAGCTAA
 
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JMFS017D12+           TTC                                                         
JMFS112F07+           TTCCTTTCCACTTCCTTGTTGTGATTTGGGTTCTTGATTTTATTTATTTATAATGCTTTT
JMFS104B09+           TTCCTTTCCACTTCCTTGTTGTGATTTGGGTTCTTGATTTTATTTATTTATAATGCTTTT
                      ____________________________________________________________
consensus             TTCCTTTCCACTTCCTTGTTGTGATTTGGGTTCTTGATTTTATTTATTTATAATGCTTTT
 
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JMFS112F07+           TGCCTTTTGGGTGTTTTATTTGCTTTCAAGAAACAGTGGAGACTATAA            
JMFS104B09+           TGCCTTTTGGGTGTTTTATTTGCTTTCAAGAAACAGTGGAGACTATAATCTATAAGAAAA
                      ____________________________________________________________
consensus             TGCCTTTTGGGTGTTTTATTTGCTTTCAAGAAACAGTGGAGACTATAATCTATAAGAAAA