Contig 001966:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS112F10+                                                     ATAAAGACATACTTAACC
                      ____________________________________________________________
consensus                                                       ATAAAGACATACTTAACC
 
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JMFS112F10+           AATGGAAACAGAAACAACGTATACAGGACCATTGAAAGCGCCCCAAGAACATCTTCATCC
JMFS102H12+                                                            CATCTTCATCC
                      ____________________________________________________________
consensus             AATGGAAACAGAAACAACGTATACAGGACCATTGAAAGCGCCCCAAGAACATCTTCATCC
 
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JMFS112F10+           CCAGTAATAGGGGCTTTACTAAACATCACACTAAAAGTATACAACGGACTCGTCCCCACA
JMFS027E09+            CAGTAATAGGGGCTTTACTAAACATCACACTAAAAGTATACAACGGACTCGTCCCCACA
JMFS102H12+           CCAGTAATAGGGGCTTTACTAAACATCACACTAAAAGTATACAACGGACTCGTCCCCACA
                      ____________________________________________________________
consensus             CCAGTAATAGGGGCTTTACTAAACATCACACTAAAAGTATACAACGGACTCGTCCCCACA
 
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JMFS112F10+           TCACCAAACACAACTCCAAGCGTCTGGAAGGCCAATGCAATTTTCCTCACTAAAGTAGCA
JMFS027E09+           TCACCAAACACAACTCCAAGCGTCTGGAAGGCCAATGCAATTTTCCTCACTAAAGTAGCA
JMFS102H12+           TCACCAAACACAACTCCAAGCGTCTGGAAGGCCAATGCAATTTTCCTCACTAAAGTAGCA
                      ____________________________________________________________
consensus             TCACCAAACACAACTCCAAGCGTCTGGAAGGCCAATGCAATTTTCCTCACTAAAGTAGCA
 
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JMFS112F10+           TCCTCAAAGTCACTCCTCTGAGCGCCAGGGACCTCAAGAGCCTCAACATCGAAGGAATCA
JMFS027E09+           TCCTCAAAGTCACTCCTCTGAGCGCCAGGGACCTCAAGAGCCTCAACATCGAAGGAATCA
JMFS102H12+           TCCTCAAAGTCACTCCTCTGAGCGCCAGGGACCTCAAGAGCCTCAACATCGAAGGAATCA
                      ____________________________________________________________
consensus             TCCTCAAAGTCACTCCTCTGAGCGCCAGGGACCTCAAGAGCCTCAACATCGAAGGAATCA
 
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JMFS112F10+           ATCCTCGGACCAGTCCTAATCAGCCTCTGCTCAGCATTATCCTCGTCGTCTTCGGAGTAC
JMFS027E09+           ATCCTCGGACCAGTCCTAATCAGCCTCTGCTCAGCATTATCCTCGTCGTCTTCGGAGTAC
JMFS102H12+           ATCCTCGGACCAGTCCTAATCAGCCTCTGCTCAGCATTATCCTCGTCGTCTTCGGAGTAC
                      ____________________________________________________________
consensus             ATCCTCGGACCAGTCCTAATCAGCCTCTGCTCAGCATTATCCTCGTCGTCTTCGGAGTAC
 
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JMFS112F10+           ATCCCATTCCGCGGCAGCGACTCGTCCCCGCTCTCGCCCGCATCCGTGCCGTCATTATAG
JMFS027E09+           ATCCCATTCCGCGGCAGCGACTCGTCCCCGCTCTCGCCCGCATCCGTGCCGTCATTATAG
JMFS102H12+           ATCCCATTCCGCGGCAGCGACTCGTCCCCGCTCTCGCCCGCATCCGTGCCGTCATTATAG
                      ____________________________________________________________
consensus             ATCCCATTCCGCGGCAGCGACTCGTCCCCGCTCTCGCCCGCATCCGTGCCGTCATTATAG
 
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JMFS112F10+           ATCTCCGACTCATCCTCCTCGTCCTGGAACACCCAGCGCGACTCGATCGAGTCGAGAGAG
JMFS027E09+           ATCTCCGACTCATCCTCCTCGTCCTGGAACACCCAGCGCGACTCGATCGAGTCGAGAGAG
JMFS102H12+           ATCTCCGACTCATCCTCCTCGTCCTGGAACACCCAGCGCGACTCGATCGAGTCGAGAGAG
                      ____________________________________________________________
consensus             ATCTCCGACTCATCCTCCTCGTCCTGGAACACCCAGCGCGACTCGATCGAGTCGAGAGAG
 
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JMFS112F10+           CCTAATCCGCCGTACTCCCTCTCCGATCCCTCGTCCGCCATCTCCAAACCTAACTCACGT
JMFS027E09+           CCTAATCCGCCGTACTCCCTCTCCGATCCCTCGTCCGCCATCTCCAAACCTAACTCACGT
JMFS102H12+           CCTAATCCGCCGTACTCCCTCTCCGATCCCTCGTCCGCCATCTCCAAACCTAACTCACGT
                      ____________________________________________________________
consensus             CCTAATCCGCCGTACTCCCTCTCCGATCCCTCGTCCGCCATCTCCAAACCTAACTCACGT
 
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JMFS112F10+           CCGTAGTAACCATTACATTACACGCGGAAAAAGCACAGCAGAGTGATTGCGAGGTGAAAC
JMFS027E09+           CCGTAGTAACCATTACATTACACGCGGAAAAAGCACAGCAGAGTGATTGCGAGGTGAAAC
JMFS102H12+           CCGTAGTAACCATTACATTACACGCGGAAAAAGCACAGCAGAGTGATTGCGAGGTGAAAC
                      ____________________________________________________________
consensus             CCGTAGTAACCATTACATTACACGCGGAAAAAGCACAGCAGAGTGATTGCGAGGTGAAAC
 
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JMFS112F10+           CCTAGAAATTGAGAAGAATTTTTCGAGTGAGATTTCTGTGTGTGTGTGTTAGCTCAGAAG
JMFS027E09+           CCTAGAAATTGAGAAGAATTTTTCGAGTGAGATTTCTGTGTGTGTGTGTTAGCTCAGAAG
JMFS102H12+           CCTAGAAATTGAGAAGAATTTTTCGAGTGAGATTTCTGTGTGTGTGTGTTAGCTCAGAAG
                      ____________________________________________________________
consensus             CCTAGAAATTGAGAAGAATTTTTCGAGTGAGATTTCTGTGTGTGTGTGTTAGCTCAGAAG
 
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JMFS112F10+           GTCATGAGA                                                   
JMFS027E09+           GTCATGAGA                                                   
JMFS102H12+           GTCATGAGAGTTGGAAGGGAAAGACTGAAAGATGGAAATGATTTCAAGCGTTAACTGTCG
                      ____________________________________________________________
consensus             GTCATGAGAGTTGGAAGGGAAAGACTGAAAGATGGAAATGATTTCAAGCGTTAACTGTCG