Contig 001965:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS075C12Sequence613001965 (2)ref|XP_006351358.1|3e-112PREDICTED: pre-mRNA-splicing factor prp12-like isoform X1 [Solanum tuberosum]
JMFS102D05Sequence627001965 (2)ref|XP_006351359.1|2e-107PREDICTED: pre-mRNA-splicing factor prp12-like isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS075C12+                                                           TCAGGATGAGCA
                      ____________________________________________________________
consensus                                                             TCAGGATGAGCA
 
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JMFS075C12+           GATGCAATAGGCACGCAAAGTCTAACAGCATCTTTGTGTATTTGCACCAGTAAACCATCA
                      ____________________________________________________________
consensus             GATGCAATAGGCACGCAAAGTCTAACAGCATCTTTGTGTATTTGCACCAGTAAACCATCA
 
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JMFS075C12+           GCCATGAGACCACATGCCAAGGTGCTGACATCAGGCTCGAAACCCACAGAATCAGTTACA
                      ____________________________________________________________
consensus             GCCATGAGACCACATGCCAAGGTGCTGACATCAGGCTCGAAACCCACAGAATCAGTTACA
 
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JMFS075C12+           TCAGAAAAGCTTACCCCAACTGAAAGCACTCTGGTTTCTTCAACAAATGAGAGAACAAGG
                      ____________________________________________________________
consensus             TCAGAAAAGCTTACCCCAACTGAAAGCACTCTGGTTTCTTCAACAAATGAGAGAACAAGG
 
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JMFS075C12+           AATGAATGATATCTATCAGTGACTTTCATTTTGACAGTCCAAGTGCCAGTTATCCCTTGA
                      ____________________________________________________________
consensus             AATGAATGATATCTATCAGTGACTTTCATTTTGACAGTCCAAGTGCCAGTTATCCCTTGA
 
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JMFS075C12+           TAAATGGGAGCAGTTTTCAACAACTTCTCCACACTGATACCACTTCGAATAATTCGTAAC
                      ____________________________________________________________
consensus             TAAATGGGAGCAGTTTTCAACAACTTCTCCACACTGATACCACTTCGAATAATTCGTAAC
 
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JMFS075C12+           GACCCTTCAGGTGCCATCCCGCAGCAAGCAAACATTTGATCATGTTTCTCATTGTAGTAG
JMFS102D05+                                            ATTTGATCATGTTTCTCATTGTAGTAG
                      ____________________________________________________________
consensus             GACCCTTCAGGTGCCATCCCGCAGCAAGCAAACATTTGATCATGTTTCTCATTGTAGTAG
 
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JMFS075C12+           TCCACAACTGACATATCCAATATTGGTGCAATGTTCTGGATTGGACTTCTGTAAACTAGC
JMFS102D05+           TCCACAACTGACATATCCAATATTGGTGCAATGTTCTGGATTGGACTTCTGTAAACTAGC
                      ____________________________________________________________
consensus             TCCACAACTGACATATCCAATATTGGTGCAATGTTCTGGATTGGACTTCTGTAAACTAGC
 
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JMFS075C12+           CTGCCATCATCCAATTTTAAAACCATCCCATCACCCATCTCAACAATAGCTGCTATAAAA
JMFS102D05+           CTGCCATCATCCAATTTTAAAACCATCCCATCACCCATCTCAACAATAGCTGCTATAAAA
                      ____________________________________________________________
consensus             CTGCCATCATCCAATTTTAAAACCATCCCATCACCCATCTCAACAATAGCTGCTATAAAA
 
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JMFS075C12+           TCACTTTCCACCCACAATAGCTCCTTTGCTGGTAGCCCTTTGTAAAGGCAATCAGATAAG
JMFS102D05+           TCACTTTCCACCCACAATAGCTCCTTTGCTGGTAGCCCTTTGTAAAGGCAATCAGATAAG
                      ____________________________________________________________
consensus             TCACTTTCCACCCACAATAGCTCCTTTGCTGGTAGCCCTTTGTAAAGGCAATCAGATAAG
 
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JMFS075C12+           CTCATTTTGATGCCATCGGAATCAGAAAAAATCTCAACCATAAAAAGTTGGCCTGAATCA
JMFS102D05+           CTCATTTTGATGCCATCGGAATCAGAAAAAATCTCAACCATAAAAAGTTGGCCTGAATCA
                      ____________________________________________________________
consensus             CTCATTTTGATGCCATCGGAATCAGAAAAAATCTCAACCATAAAAAGTTGGCCTGAATCA
 
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JMFS075C12+           G                                                           
JMFS102D05+           GCACTAAAAATCATCCTTGGGTTGTTTTTATTTGCAGAGTCCCAACTCCATGAGCAGACA
                      ____________________________________________________________
consensus             GCACTAAAAATCATCCTTGGGTTGTTTTTATTTGCAGAGTCCCAACTCCATGAGCAGACA
 
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JMFS102D05+           TAATTAGTACCTGGTTTGGTGCTGCTATCATCATCAATATTCATTGGATCACTTTTGTTT
                      ____________________________________________________________
consensus             TAATTAGTACCTGGTTTGGTGCTGCTATCATCATCAATATTCATTGGATCACTTTTGTTT
 
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JMFS102D05+           ATGTCACTGAGCTCCAATAAGGCAGAGGCAGCAACATTATACATTCCTTCTTCATCAATG
                      ____________________________________________________________
consensus             ATGTCACTGAGCTCCAATAAGGCAGAGGCAGCAACATTATACATTCCTTCTTCATCAATG
 
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JMFS102D05+           ATATCAGGAATCCTAATTGTAGGTTCCACAAAATTCTGCTCTTCCACTGAAGGAGTAAAA
                      ____________________________________________________________
consensus             ATATCAGGAATCCTAATTGTAGGTTCCACAAAATTCTGCTCTTCCACTGAAGGAGTAAAA
 
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JMFS102D05+           TTTAAACTAATTCTATATAGGAAATAAGGATTATGAGCATCCTTGCAATCCATTAAGACG
                      ____________________________________________________________
consensus             TTTAAACTAATTCTATATAGGAAATAAGGATTATGAGCATCCTTGCAATCCATTAAGACG
 
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JMFS102D05+           GCATCTCCAGCCTTGAACAGTATAACTAGTCCATAAGAATGCGGAACTTCAACTATATGA
                      ____________________________________________________________
consensus             GCATCTCCAGCCTTGAACAGTATAACTAGTCCATAAGAATGCGGAACTTCAACTATATGA