Contig 001964:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033O14Sequence407009316 (6)ref|XP_010065507.1|9e-39PREDICTED: pinin [Eucalyptus grandis] gb|KCW63027.1| hypothetical protein EUGRSU735001964 (7)gb|KDP43620.1|3e-44hypothetical protein JCGZ_16907 [Jatropha curcas]
JMFS101H07Sequence450001964 (7)gb|KDP43620.1|4e-18hypothetical protein JCGZ_16907 [Jatropha curcas]
JMSF016M05Sequence330001964 (7)
JMSF021O17Sequence615009316 (6)ref|XP_011087796.1|2e-70PREDICTED: pinin [Sesamum indicum]781001964 (7)ref|XP_011087796.1|5e-71PREDICTED: pinin [Sesamum indicum]
JMSF035G19Sequence654009316 (6)ref|XP_011087796.1|4e-84PREDICTED: pinin [Sesamum indicum]720001964 (7)ref|XP_011087796.1|1e-65PREDICTED: pinin [Sesamum indicum]
JMSF036F11Sequence596009316 (6)ref|XP_011087796.1|3e-70PREDICTED: pinin [Sesamum indicum]724001964 (7)ref|XP_011087796.1|2e-61PREDICTED: pinin [Sesamum indicum]
JMSF050P19Sequence591009316 (6)ref|XP_011087796.1|2e-68PREDICTED: pinin [Sesamum indicum]723001964 (7)ref|XP_011087796.1|2e-61PREDICTED: pinin [Sesamum indicum]

Alignment

This contig is upended


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rJMFF033O14+                                      CTATGCAATTTTATAAGGTTATTTNTAATTTT
                      ____________________________________________________________
consensus                                         CTATGCAATTTTATAAGGTTATTTNTAATTTT
 
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rJMFF033O14+          GGTCCAAAAGTGTGCATATTCACAATTTTATTGATCCAAAGATAAGTTTCCATTCATATG
                      ____________________________________________________________
consensus             GGTCCAAAAGTGTGCATATTCACAATTTTATTGATCCAAAGATAAGTTTCCATTCATATG
 
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rJMFF033O14+          CAGAAACGTTGAAGCAGCCAAAAGCCGGCAATGTCCGGCTTTGCATGATTAATGGATTTC
rJMSF050P19+                                           TGCTGCTAAGGCCAAGGAAAAGAGGAT
rJMSF035G19+                                           TGCTGCTAAGGCCAAGGAAAAGAGGAT
rJMSF036F11+                                           TGCTGCTAAGGCCAAGGAAAAGAGGAT
                      ____________________________________________________________
consensus             CAGAAACGTTGAAGCAGCCAAAAGCCGGCAATGTGCTGCTAAGGCCAAGGAAAAGAGGAT
 
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rJMFF033O14+          TTGTTAATTGATTCATAACTATACTCNTTTTTATCTTTTTCT-TGATATCCATTCAGGAC
rJMSF050P19+          GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
rJMSF035G19+          GGAATTTTTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
rJMSF021O17+                                                                 AGGAC
rJMSF036F11+          GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
                      ____________________________________________________________
consensus             GGAATTATTATTTCTTAAGTGGAGTGAGCACAAGAAAAAACTAGGCAATTTTATAAGGAC
 
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rJMFF033O14+          GGAAGCAGTGCCTCCAATATATTACACGTTNGCCAAACCANTGGATGAAGATACTTNTGT
rJMSF050P19+          GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
rJMSF035G19+          GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
rJMSF021O17+          GGAAGCAGTGCCTCCAATATATTACACGTTCGCCGAACCACTGGATGAAGATACTTCTGT
rJMSF036F11+          GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
                      ____________________________________________________________
consensus             GGAAGCAGTGCCTCCAATATATTACACGTTCGCCAAACCACTGGATGAAGATACTTCTGT
 
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rJMFF033O14+          ANNTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTTCGAGGGAGGAATT
rJMSF050P19+          AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF035G19+          AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF021O17+          AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
rJMSF036F11+          AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
                      ____________________________________________________________
consensus             AACTGAGCAGAAAAAAGAACAGATATTCCAAGAGTGGAAAGCTGCTACGAGGGAGGAATT
 
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rJMFF033O14+          GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF050P19+          GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF035G19+          GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF021O17+          GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
rJMSF036F11+          GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
                      ____________________________________________________________
consensus             GTCCCAATATCAGAAGCAAATTGGTGAAGAATACGTCTTGAATGTTGAGAAAGAGCTGGA
 
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rJMFF033O14+          GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACNACAATACTGCCGCGAATCTCCA
rJMSF050P19+          GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF035G19+          GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF021O17+          GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
rJMSF036F11+          GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
JMFS101H07-                                     GGAGACCAAACAACAATACTGCCGCGAATCTCCA
                      ____________________________________________________________
consensus             GAGATGGCAAAATGGCCGAAGAGGCAGGAGACCAAACAACAATACTGCCGCGAATCTCCA
 
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rJMFF033O14+          CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF050P19+          CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF035G19+          CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF021O17+          CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF036F11+          CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
rJMSF016M05+                                        TAGGNTTGANCATGGNCCAANGACCNGAAA
JMFS101H07-           CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
                      ____________________________________________________________
consensus             CGAGACAATGGACAAGGAACTTGAAACCCATAGGCTTGAACATGGACCAAAGACCAGAAA
 
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rJMFF033O14+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF050P19+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF035G19+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF021O17+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF036F11+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
rJMSF016M05+          GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATNNTAATGTTGGGGA
JMFS101H07-           GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
                      ____________________________________________________________
consensus             GATCCCTGGCAGTGATAACAATGAAGATGAGGAAGATGTTGAAGATATTAATGTTGGGGA
 
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rJMFF033O14+          GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAN
rJMSF050P19+          GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF035G19+          GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF021O17+          GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF036F11+          GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
rJMSF016M05+          GGATGACATGATGGATNGATGTACTTGGTGTTGACGNGAACAATCNNAGGGGTGATGAAN
JMFS101H07-           GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
                      ____________________________________________________________
consensus             GGATGACATGATGGAT-GATGTACTTGGTGTTGACGAGAACAATCAGAGGGGTGATGAAA
 
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rJMFF033O14+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF050P19+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF035G19+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF021O17+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF036F11+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
rJMSF016M05+          CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
JMFS101H07-           CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
                      ____________________________________________________________
consensus             CTGCAAAACCAGAAGTAGCCAATGGTAGTCCACAGCTGGAGAACCAGGGTCAGTAGAGTA
 
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rJMFF033O14+          CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTG            
rJMSF050P19+          CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF035G19+          CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF021O17+          CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF036F11+          CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
rJMSF016M05+          CCTCTCATAGTTTAAAGGTNTATACTTATGCTNTGTTGNGTTNTACTGTTTCGATTCGTA
JMFS101H07-           CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
                      ____________________________________________________________
consensus             CC-CTCATA-TTTAAAGGTTTATA-TTATGCTTTGTTGTGTTTTACTGTTTTGATTCGTA
 
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rJMSF050P19+          TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF035G19+          TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF021O17+          TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF036F11+          TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
rJMSF016M05+          TGTACTTTAATTTCCCTTTATTGGTANTTGCCGTANGTTTTACNTCANTAGTTCATTT  
JMFS101H07-           TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
                      ____________________________________________________________
consensus             TGTACTTTAATTTCACTTTATTGGTAGTTGCTGTATGTTTTACGTCATTAGTTCATTTTG
 
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rJMSF050P19+          TTTGGTATTTATGGACCCATACATTT                                  
rJMSF035G19+          TTTGGTATTTATGGACCCATACATTT                                  
rJMSF021O17+          TTTGGTATTTATGGACCCATAC                                      
rJMSF036F11+          TTTGGTATTTATGGACCCATACATTT                                  
JMFS101H07-           TTTGGTATTTATGGACCCATACATTTGTTGAGTTAATTTAAACAGGATTTTCTTTTCTTA
                      ____________________________________________________________
consensus             TTTGGTATTTATGGACCCATACATTTGTTGAGTTAATTTAAACAGGATTTTCTTTTCTTA