Contig 001960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001B06Sequence483001960 (4)ref|XP_004239889.1|7e-43PREDICTED: squamosa promoter-binding-like protein 1 [Solanum lycopersicum]
JMFS092E09Sequence624001960 (4)ref|XP_009617582.1|2e-85PREDICTED: squamosa promoter-binding-like protein 12 [Nicotiana tomentosiformis
JMFS097D05Sequence610001960 (4)ref|XP_008223488.1|2e-79PREDICTED: squamosa promoter-binding-like protein 12 [Prunus mume]
JMSF041E11Sequence669003459 (13)emb|CDO98702.1|2e-69unnamed protein product [Coffea canephora]620001960 (4)ref|XP_004239889.1|3e-54PREDICTED: squamosa promoter-binding-like protein 1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF041E11-                ACACAAGGTACACACGGTCCAAATAACATCTCTAAGTAACATTTCAGCTCTTAT
                      ____________________________________________________________
consensus                   ACACAAGGTACACACGGTCCAAATAACATCTCTAAGTAACATTTCAGCTCTTAT
 
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JMFN001B06+                                    AAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
rJMSF041E11-          GTAACTACACCTACCAAGATACAACAAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
                      ____________________________________________________________
consensus             GTAACTACACCTACCAAGATACAACAAAAATCAATTGAGTAATCTCTAAGCTCCATTCAT
 
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JMFN001B06+           GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
rJMSF041E11-          GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
                      ____________________________________________________________
consensus             GGAGGAACACCCACCTCGGTGCTTCTTCGCCTTATTTTGTACCTACGTTAGCTCGAACCG
 
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JMFN001B06+           TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
rJMSF041E11-          TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
                      ____________________________________________________________
consensus             TACTTCAAAAGCTCCCACCGGAAAGGCTGGAACACGTAGAGGACCTCCGGTGAGCTTTTA
 
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JMFN001B06+           AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
rJMSF041E11-          AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
                      ____________________________________________________________
consensus             AACAGCAAAGCTACGCAAACGCAGATGGCCGCGATTGCAACCATGGACAGCATTGCGGGT
 
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JMFN001B06+           CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
rJMSF041E11-          CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
                      ____________________________________________________________
consensus             CTGTAAATCGCGAGCGATGTGCTGCAGCTTCCATACTGCAGCTTCTGCTCGCACCGCCTG
 
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JMFN001B06+           CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
rJMSF041E11-          CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
JMFS092E09+                                                       GAAGCTCGATGCTTTC
                      ____________________________________________________________
consensus             CAACTTCTCGTGCTCGGTTTCGTCGTCACTAGCTTCTCCGTTTGGAAGCTCGATGCTTTC
 
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JMFN001B06+           GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
rJMSF041E11-          GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
JMFS092E09+           GGTTCTGNGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
                      ____________________________________________________________
consensus             GGTTTCTGGCTCGTGTCTCCTGGGATATCTAGGACGACATGAACGTTAGCTGGTTTTGGG
 
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JMFN001B06+           TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
rJMSF041E11-          TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
JMFS092E09+           TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
                      ____________________________________________________________
consensus             TCGGTTTTCTTCTGGATTAGATGGATGTACGAATAGTGGCCTCGCAAGGATGCGTAGTCG
 
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JMFN001B06+           TTGGGCGTTAATCCTGTACTGTCGCGTG                                
rJMSF041E11-          TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
JMFS092E09+           TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
                      ____________________________________________________________
consensus             TTGGGCGTTAATCCTGTACTGTCGCGTGCGTTCTTCCACGCTTGAACTCCAACCTGTCCC
 
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rJMSF041E11-          GGGTCATTGATTAAGGCGTCCAACAA                                  
JMFS092E09+           GGGTCATTGATTAAGGCGTCCAACAAATTCTCCAAGCCTTTCTGACTGGCTACAATGTGG
                      ____________________________________________________________
consensus             GGGTCATTGATTAAGGCGTCCAACAAATTCTCCAAGCCTTTCTGACTGGCTACAATGTGG
 
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JMFS092E09+           AGCGGAGTCAAGCCCCCGATTACTATTGCATCTGGTCTAAATATATAGTGGCCACCATGT
JMFS097D05+                                                             GCCACCATGT
                      ____________________________________________________________
consensus             AGCGGAGTCAAGCCCCCGATTACTATTGCATCTGGTCTAAATATATAGTGGCCACCATGT
 
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JMFS092E09+           TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
JMFS097D05+           TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
                      ____________________________________________________________
consensus             TGTGTTTTTACAAGCTCCGAATTGTCCGGTCCTTTATCCGGACAGTATTGTAGGAGAGCC
 
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JMFS092E09+           TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
JMFS097D05+           TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
                      ____________________________________________________________
consensus             TCTACCATTCGTCTGCAGTTTCCACGTACAGCCTGATGGAGGAGGCCGATATCCTGCAAT
 
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JMFS092E09+           GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
JMFS097D05+           GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
                      ____________________________________________________________
consensus             GCCATCTCGAGGGACGAGTGTTCTCCAGCATCCACGATTCCACCAAACAGAATGTCCAAA
 
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JMFS092E09+           AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
JMFS097D05+           AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
                      ____________________________________________________________
consensus             AGCTTCTTAACCACAGCACACCAGTCACGGTCAACTGAGAACTCTATAAGCCACCTAAAC
 
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JMFS092E09+           CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
JMFS097D05+           CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
                      ____________________________________________________________
consensus             CGGTCAAAAGGGAAATGGCTCGAGTTGGAACCCGATCTAAATTTCAAGTGACTTCTATGA
 
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JMFS092E09+           AGGAGCCA                                                    
JMFS097D05+           AGGAGCCAGCCCATATCATGTATAAAGTCCAAAGCTCGGTTTCTGGCTTCTAATTTTTCG
                      ____________________________________________________________
consensus             AGGAGCCAGCCCATATCATGTATAAAGTCCAAAGCTCGGTTTCTGGCTTCTAATTTTTCG
 
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JMFS097D05+           GGTTCTTCTTGGGAGTCGGAAGCAGTTTCTGCAACGTCAATGCTGCTCTCTAGTGTACAG
                      ____________________________________________________________
consensus             GGTTCTTCTTGGGAGTCGGAAGCAGTTTCTGCAACGTCAATGCTGCTCTCTAGTGTACAG
 
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JMFS097D05+           ATTTCGGAACACACATCCTCCTCCGCAACTATAAACGGGAAGAAACTGCCGCTGAGACCG
                      ____________________________________________________________
consensus             ATTTCGGAACACACATCCTCCTCCGCAACTATAAACGGGAAGAAACTGCCGCTGAGACCG
 
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JMFS097D05+           TGATCCTCGACCTCAATGAATCCCCGGCCCGTGACATTAGGTATACTGCAGGGAAAGCTA
                      ____________________________________________________________
consensus             TGATCCTCGACCTCAATGAATCCCCGGCCCGTGACATTAGGTATACTGCAGGGAAAGCTA
 
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JMFS097D05+           AGGGACTGGATCTCGTTATGATCGTTCTGATCCACTAATGAATCAGCTTCCACCATATCA
                      ____________________________________________________________
consensus             AGGGACTGGATCTCGTTATGATCGTTCTGATCCACTAATGAATCAGCTTCCACCATATCA