Contig 001957:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS090G10Sequence627001957 (4)ref|XP_009795719.1|4e-72PREDICTED: transcription factor MYB44-like [Nicotiana sylvestris]
JMSF013I17Sequence430001957 (4)dbj|BAC53938.1|2e-69Myb-like protein [Nicotiana tabacum]762007496 (2)gb|KDP41681.1|4e-47hypothetical protein JCGZ_16088 [Jatropha curcas] gb|AIT52202.1| MYB family prot
JMSF028K11Sequence669001957 (4)ref|XP_004238123.1|9e-73PREDICTED: transcription factor MYB44-like [Solanum lycopersicum]676017171ref|XP_009795719.1|8e-23PREDICTED: transcription factor MYB44-like [Nicotiana sylvestris]
JMSF053I23Sequence673001957 (4)ref|XP_009795719.1|2e-73PREDICTED: transcription factor MYB44-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF028K11+                                    ACCGGAAAGACCCCGCCGGTGCGAGCAATGGGGCG
JMSF053I23+                                                 CGCCGGTGCGAGCAATGGGGCG
JMFS090G10+                                                 CGCCGGTGCGAGCAATGGGGCG
                      ____________________________________________________________
consensus                                      ACCGGAAAGACCCCGCCGGTGCGAGCAATGGGGCG
 
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JMSF028K11+           GTAAAGGTGAGGGAGGCTAGAATCGCTCAAATCAGATCCGGACGGGCTCCTGGGGCTCAC
JMSF053I23+           GTAAAGGTGAGGGAGGCTAGAATCGCTCAAATCAGATCCGGACGGGCTCCCGGGGCTCAC
JMFS090G10+           GTAAAGGTGAGGGAGGCTAGAATCGCTCAAATCAGATCCGGACGGGCTCCCGGGGCTCAC
                      ____________________________________________________________
consensus             GTAAAGGTGAGGGAGGCTAGAATCGCTCAAATCAGATCCGGACGGGCTCCCGGGGCTCAC
 
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JMSF028K11+           ATAAAACCCGGAAACCGAACCCGAACCCGAAACATTCACCCCCGCCGCCCCGACGCTCGA
JMSF053I23+           ATAAAACCCGGAAACCGAACCCGAACCCGAAACATTCACCCCCGCCGCCCCGACGCTCGA
JMFS090G10+           ATAAAACCCGGAAACCGAACCCGAACCCGAAACATTCACCCCCGCCGCCCCGACGCTCGA
                      ____________________________________________________________
consensus             ATAAAACCCGGAAACCGAACCCGAACCCGAAACATTCACCCCCGCCGCCCCGACGCTCGA
 
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JMSF028K11+           AGATCTCTTCCGCCGCGGCTCGAAGCCGCTCGAGTCCTCCGACACCGCCGCCGCCGCGCT
JMSF053I23+           AGATCTCTTCCGCCGCGGCTCGAAGCCGCTCGAGTCCTCCGACACCGCCGCCGCCGCGCT
JMFS090G10+           AGATCTCTTCCGCCGCGGCTCGAAGCCGCTCGAGTCCTCCGACACCGCCGCCGCCGCGCT
                      ____________________________________________________________
consensus             AGATCTCTTCCGCCGCGGCTCGAAGCCGCTCGAGTCCTCCGACACCGCCGCCGCCGCGCT
 
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JMSF028K11+           CTTCCGCTTCAACGTCGAGTTCCAGTGATTCTTAATCGCGTTATCCGTCCGCCCGCTCAG
JMSF053I23+           CTTCCGCTTCAACGTCGAGTTCCAGTGATTCTTAATCGCGTTATCCGTCCGCCCGCTCAG
JMSF013I17+                              TTCCAGTGATTCTTAATGGCGTTATCCGTCCGGCCACTAAG
JMFS090G10+           CTTCCGCTTCAACGTCGAGTTCCAGTGATTCTTAATCGCGTTATCCGTCCGCCCGCTCAG
                      ____________________________________________________________
consensus             CTTCCGCTTCAACGTCGAGTTCCAGTGATTCTTAATCGCGTTATCCGTCCGCCCGCTCAG
 
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JMSF028K11+           CAGCCGCGCGATGGTGGCCCACTTGTTCCCGAACTTCGCGTGCGCCCTAACTATCTTCTC
JMSF053I23+           CAGCCGCGCGATGGTGGCCCACTTGTTCCCGAACTTCGCGTGCGCCCTAACTATCTTCTC
JMSF013I17+           CAACCGGGCTATGGTGGCCCACTTATTCCCGAACTTCGCATGCGCCCGGATGATCGTCTC
JMFS090G10+           CAGCCGCGCGATGGTGGCCCACTTGTTCCCGAACTTCGCGTGCGCCCTAACTATCTTCTC
                      ____________________________________________________________
consensus             CAGCCGCGCGATGGTGGCCCACTTGTTCCCGAACTTCGCGTGCGCCCTAACTATCTTCTC
 
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JMSF028K11+           ATCCTCCTCCGCCGTGAACGCCCGGTGCTCCACCTGCGGCGACAGCTGGTTGCACCACCG
JMSF053I23+           ATCCTCCTCCGCCGTGAACGCCCGGTGCTCCACCTGCGGCGACAGCTGGTTGCACCACCG
JMSF013I17+           ATCCTCCTCCGCCGTAAACGGCCGGTGCTCCACTTCCGGCGAAAGCTGATTACACCACCG
JMFS090G10+           ATCCTCCTCCGCCGTGAACGCCCGGTGCTCCACCTGCGGCGACAGCTGGTTGCACCACCG
                      ____________________________________________________________
consensus             ATCCTCCTCCGCCGTGAACGCCCGGTGCTCCACCTGCGGCGACAGCTGGTTGCACCACCG
 
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JMSF028K11+           CAGCCGGCACGACTTCCCGGACCTCCCCGGAATCGATTTGCTGATCAGAGACCAATTCCT
JMSF053I23+           CAGCCGGCACGACTTCCCGGACCTCCCCGGAATCGATTTGCTGATCAGAGACCAATTCCT
JMSF013I17+           GAGCCGGCACGACTTCCCAGACCGTCCCGGAATAGAATTCCCGATGAGCGACCAGTTCCT
JMFS090G10+           CAGCCGGCACGACTTCCCGGACCTCCCCGGAATCGATTTGCTGATCAGAGACCAATTCCT
                      ____________________________________________________________
consensus             CAGCCGGCACGACTTCCCGGACCTCCCCGGAATCGATTTGCTGATCAGAGACCAATTCCT
 
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JMSF028K11+           CGGCCCGTGCTTCTCCACCAGCCTCTGCAACAGCTCATCCTCTTCAGGACTCCATGGCCC
JMSF053I23+           CGGCCCGTGCTTCTCCACCAGCCTCTGCAACAGCTCATCCTCTTCAGGACTCCATGGCCC
JMSF013I17+           CGGCCCGTACTTCTCCACCAACCTCTCCAACATCTCATCCTCTTCTGGACTCCA      
JMFS090G10+           CGGCCCGTGCTTCTCCACCAGCCTCTGCAACAGCTCATCCTCTTCAGGACTCCATGGCCC
                      ____________________________________________________________
consensus             CGGCCCGTGCTTCTCCACCAGCCTCTGCAACAGCTCATCCTCTTCAGGACTCCATGGCCC
 
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JMSF028K11+           C                                                           
JMSF053I23+           C                                                           
JMFS090G10+           CCTGATCCGATCCGCATCTTTCTTCTGCGACATCGTCGCCATAGCCGATTCAACACAGAA
                      ____________________________________________________________
consensus             CCTGATCCGATCCGCATCTTTCTTCTGCGACATCGTCGCCATAGCCGATTCAACACAGAA
 
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JMFS090G10+           ATTCAACAAAATTCAAAATTCAAAATCGAGAAAATATAGGGAGGATGTATATATACAGTT
                      ____________________________________________________________
consensus             ATTCAACAAAATTCAAAATTCAAAATCGAGAAAATATAGGGAGGATGTATATATACAGTT