Contig 001956:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017P18Sequence604001956 (3)ref|XP_009799179.1|7e-79PREDICTED: uncharacterized protein LOC104245287 isoform X1 [Nicotiana sylvestri795016950ref|XP_009602350.1|2e-127PREDICTED: uncharacterized protein LOC104097489 isoform X3 [Nicotiana tomentosi
JMFS088G10Sequence619001956 (3)ref|XP_009799179.1|3e-86PREDICTED: uncharacterized protein LOC104245287 isoform X1 [Nicotiana sylvestri
JMSF017C01Sequence384001956 (3)gb|KJB54383.1|3e-29hypothetical protein B456_009G031800 [Gossypium raimondii]785013939 (2)ref|XP_009602351.1|1e-55PREDICTED: uncharacterized protein LOC104097489 isoform X4 [Nicotiana tomentosi

Alignment

This contig is upended


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JMFF017P18+                                TCTTTCCAAGAAATCATTGCCCAAGCGCTCTTCAATGCC
                      ____________________________________________________________
consensus                                  TCTTTCCAAGAAATCATTGCCCAAGCGCTCTTCAATGCC
 
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JMFF017P18+           TCTATTCAAATCATAGCGACCAGAAACATTGACCACAGTATGAACATCATGATACTTTGA
JMFS088G10+                             ACCAGAAACATTGACCACAGTATGAACATCATGATACTTTGA
                      ____________________________________________________________
consensus             TCTATTCAAATCATAGCGACCAGAAACATTGACCACAGTATGAACATCATGATACTTTGA
 
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JMFF017P18+           AGCGTATAGGAGCACAACATTTCCACCTTTACTATGTCCAAGAATGGCCGTTACTCTGCA
JMFS088G10+           AGCGTATAGGAGCACAACATTTCCACCTTTACTATGTCCAAGAATGGCCGTTACTCTGCA
                      ____________________________________________________________
consensus             AGCGTATAGGAGCACAACATTTCCACCTTTACTATGTCCAAGAATGGCCGTTACTCTGCA
 
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JMFF017P18+           GTTTTGCCCAATAAAGTGTTCAACAACGGAATGCAAATCATCAGCCTCTCTCTGATAGTG
JMFS088G10+           GTTTTGCCCAATAAAGTGTTCAACAACGGAATGCAAATCATCAGCCTCTCTCTGATAGTG
                      ____________________________________________________________
consensus             GTTTTGCCCAATAAAGTGTTCAACAACGGAATGCAAATCATCAGCCTCTCTCTGATAGTG
 
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JMSF017C01+                           CCTTCACTTTCCCCGTTACCAGCGAAATCAAACCGAAATGCACT
JMFF017P18+           ACCGTACCTAAATGAGCCTTCACTTTCCCCATTTCCAGCAAAGTCAAAGCGAAATGCACT
JMFS088G10+           ACCGTACCTAAATGAGCCTTCACTTTCCCCATTTCCAGCAAAGTCAAAGCGAAATGCACT
                      ____________________________________________________________
consensus             ACCGTACCTAAATGAGCCTTCACTTTCCCCATTTCCAGCAAAGTCAAAGCGAAATGCACT
 
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JMSF017C01+           TATTCCTTCTGCCTCCAATGCAGCAGCTAGGCTCACCATTATCCTGTCATTCTTTGTGCA
JMFF017P18+           TATTCCTTCTTTCTCCAATGCAGTGGCTACGCCCACCATTATTCTGTTCTCCTTTTTGGA
JMFS088G10+           TATTCCTTCTTTCTCCAATGCAGTGGCTACGCCCACCATTATTCTGTTCTCCTTTTTGGA
                      ____________________________________________________________
consensus             TATTCCTTCTTTCTCCAATGCAGTGGCTACGCCCACCATTATTCTGTTCTCCTTTTTGGA
 
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JMSF017C01+           TAGGAAACCATGACACAACACCACAATATCTGGAGATCCAGTTTCATGCAGTATACCCAC
JMFF017P18+           TCGAAAACCGTGGCACAACACCACAACATCTGGACATCCAGTGTCATGCAGTATACCCAC
JMFS088G10+           TCGAAAACCGTGGCACAACACCACAACATCTGGACATCCAGTGTCATGCAGTATACCCAC
                      ____________________________________________________________
consensus             TCGAAAACCGTGGCACAACACCACAACATCTGGACATCCAGTGTCATGCAGTATACCCAC
 
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JMSF017C01+           CAGCTTCTCATTATATTTGTTTTGTATGCTCATTTTCTTCTGTGTAATCCCTGGGTT   
JMFF017P18+           TAGCTTCTCATTATACTTGTTTGGTATGGTGATTTTCTTCTGTGCAATGCCTGGGTT   
JMFS088G10+           TAGCTTCTCATTATACTTGTTTGGTATGGTGATTTTCTTCTGTGCAATGCCTGGGTTCGA
                      ____________________________________________________________
consensus             TAGCTTCTCATTATACTTGTTTGGTATGGTGATTTTCTTCTGTGCAATGCCTGGGTTCGA
 
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JMFS088G10+           ATCCATCTTGAAGATTGCTCTGGTTTTGATGGTGTGGGTAGCTGAAGGCGTGAAGCGTAC
                      ____________________________________________________________
consensus             ATCCATCTTGAAGATTGCTCTGGTTTTGATGGTGTGGGTAGCTGAAGGCGTGAAGCGTAC
 
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JMFS088G10+           CGGCGAGTTGTGAGCTCCTTTGTAGTCAGAGGCGTCGCGGGACTGAACGCCTGAACCAGA
                      ____________________________________________________________
consensus             CGGCGAGTTGTGAGCTCCTTTGTAGTCAGAGGCGTCGCGGGACTGAACGCCTGAACCAGA