Contig 001955:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS088F09Sequence637001955 (2)ref|XP_009773205.1|5e-58PREDICTED: RING-H2 finger protein ATL38-like [Nicotiana sylvestris]
JMSF004E19Sequence410001955 (2)ref|XP_009603250.1|1e-66PREDICTED: RING-H2 finger protein ATL38-like isoform X2 [Nicotiana tomentosifor303005594 (2)ref|XP_009608451.1|7e-12PREDICTED: F-box/WD repeat-containing protein 7-like isoform X1 [Nicotiana tome

Alignment

This contig is upended


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JMSF004E19+                             ACGAGAGCCTATTCCACGAACGAATGCACTGGTGGGGATTAA
                      ____________________________________________________________
consensus                               ACGAGAGCCTATTCCACGAACGAATGCACTGGTGGGGATTAA
 
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JMSF004E19+           CATTCACGGATGCCATGGCATGGTGACACCGGACAGCTGAACTGAACAGCGGTGGCATCA
                      ____________________________________________________________
consensus             CATTCACGGATGCCATGGCATGGTGACACCGGACAGCTGAACTGAACAGCGGTGGCATCA
 
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JMSF004E19+           TAAACCGCTTTTTCTCGGTGACCTCGCGGAGGGAGATTCGACAGACTGGACAAGTGGAGT
                      ____________________________________________________________
consensus             TAAACCGCTTTTTCTCGGTGACCTCGCGGAGGGAGATTCGACAGACTGGACAAGTGGAGT
 
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JMSF004E19+           GCTGCTGCAGCCACACGTCGATACACGTCGCGTGAAAATAATGCCCGCAGAATGGCAGGA
JMFS088F09+                                  CACGTCGCGTGAAAATAATGCCCGCAGAATGGCAGGA
                      ____________________________________________________________
consensus             GCTGCTGCAGCCACACGTCGATACACGTCGCGTGAAAATAATGCCCGCAGAATGGCAGGA
 
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JMSF004E19+           TGCGCAACGAATCTTCTTGCTGGTAATCACCGAGACATACTGTGCATTGAGTGTCTTCGG
JMFS088F09+           TGCGCAACGAATCTTCTTGCTGGTAATCACCGAGACATACTGTGCATTGAGTGTCTTCGG
                      ____________________________________________________________
consensus             TGCGCAACGAATCTTCTTGCTGGTAATCACCGAGACATACTGTGCATTGAGTGTCTTCGG
 
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JMSF004E19+           CTGAGGTGAAAAACACATCACTATACTTCTTAGTCGGGAATTTGCTCACAGCTAGAGGTT
JMFS088F09+           CTGAGGTGAAAAACACATCACTATAATTCTTAGTCGGGAATTTGCTCACAGCTAGAGGTT
                      ____________________________________________________________
consensus             CTGAGGTGAAAAACACATCACTATACTTCTTAGTCGGGAATTTGCTCACAGCTAGAGGTT
 
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JMSF004E19+           CAAGACCGTGCAGCCCGCGTTCTAAAATGCTAAGGTCAGATCCAGAACCCCTGGCTAGAG
JMFS088F09+           CAAGACCGTGCAGCCCGCGTTCTAAAATGCTAAGGTCAGATCCAGAACCCCTGGCTAGAG
                      ____________________________________________________________
consensus             CAAGACCGTGCAGCCCGCGTTCTAAAATGCTAAGGTCAGATCCAGAACCCCTGGCTAGAG
 
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JMSF004E19+           AGCGCC                                                      
JMFS088F09+           AGCGCCTTGTGGAGCTCAATTGAATCCGTGCACAGATTAGTCTTGTGCAGACGAAGACAA
                      ____________________________________________________________
consensus             AGCGCCTTGTGGAGCTCAATTGAATCCGTGCACAGATTAGTCTTGTGCAGACGAAGACAA
 
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JMFS088F09+           TGAACATGGTACTCACTGCAAACCCAATCACTGTCATCACCAAATTCGTCTCGGAAGAAA
                      ____________________________________________________________
consensus             TGAACATGGTACTCACTGCAAACCCAATCACTGTCATCACCAAATTCGTCTCGGAAGAAA
 
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JMFS088F09+           TCATCTTCCCTCGCCCAAGAAGCCCTTACCGAAAGAAAGAACCAAGAATTGGAATTCCCA
                      ____________________________________________________________
consensus             TCATCTTCCCTCGCCCAAGAAGCCCTTACCGAAAGAAAGAACCAAGAATTGGAATTCCCA
 
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JMFS088F09+           GAAAGTTTCAATTTTTCGCCTTTCTCATGAGCTATCATCAATTTCTGTTCTCGACCCACT
                      ____________________________________________________________
consensus             GAAAGTTTCAATTTTTCGCCTTTCTCATGAGCTATCATCAATTTCTGTTCTCGACCCACT
 
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JMFS088F09+           CCCTAAAATCTCCGAACAAACGTAAACGGAATCCTTAAAGACAGCATTTTGTCACTTTCA
                      ____________________________________________________________
consensus             CCCTAAAATCTCCGAACAAACGTAAACGGAATCCTTAAAGACAGCATTTTGTCACTTTCA
 
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JMFS088F09+           CGCTCTTAAAAAAAAAAATCACCAACCCTTATGCTTTCAACTTTTAGAAGTAGACTCTTG
                      ____________________________________________________________
consensus             CGCTCTTAAAAAAAAAAATCACCAACCCTTATGCTTTCAACTTTTAGAAGTAGACTCTTG
 
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JMFS088F09+           AGCTACTATTCTTTATCGAATCTCTCCCTCTCTCTCTCTATAATCTCTCTGCATGTGTGT
                      ____________________________________________________________
consensus             AGCTACTATTCTTTATCGAATCTCTCCCTCTCTCTCTCTATAATCTCTCTGCATGTGTGT