| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP015E09 | Sequence | 222 | 001951 (9) | dbj|BAI47580.1| | 5e-25 | beta-carotene hydroxylase [Ipomoea nil] | |||||
| JMFF007E23 | Sequence | 347 | 011481 (2) | 505 | 001951 (9) | dbj|BAI47580.1| | 4e-41 | beta-carotene hydroxylase [Ipomoea nil] | |||
| JMFF046D23 | Sequence | 564 | 011481 (2) | ref|XP_009610162.1| | 4e-21 | PREDICTED: protein RCC2 [Nicotiana tomentosiformis] | 454 | 001951 (9) | dbj|BAI47580.1| | 1e-53 | beta-carotene hydroxylase [Ipomoea nil] |
| JMFN032K06 | Sequence | 629 | 001951 (9) | dbj|BAI47580.1| | 3e-128 | beta-carotene hydroxylase [Ipomoea nil] | |||||
| JMFS086E08 | Sequence | 606 | 001951 (9) | dbj|BAI47580.1| | 5e-53 | beta-carotene hydroxylase [Ipomoea nil] | |||||
| JMFS086F07 | Sequence | 618 | 001951 (9) | dbj|BAI47580.1| | 6e-53 | beta-carotene hydroxylase [Ipomoea nil] | |||||
| JMFS151F06 | Sequence | 626 | 001951 (9) | dbj|BAI47580.1| | 1e-86 | beta-carotene hydroxylase [Ipomoea nil] | |||||
| JMSF030P12 | Sequence | 661 | 001951 (9) | dbj|BAI47580.1| | 2e-87 | beta-carotene hydroxylase [Ipomoea nil] | 669 | 001951 (9) | dbj|BAI47580.1| | 3e-104 | beta-carotene hydroxylase [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMFF046D23- CCCTTATGGCGGATCACCCGGAGAGTTTTTTTTT
____________________________________________________________
consensus CCCTTATGGCGGATCACCCGGAGAGTTTTTTTTT
. : . : . : . : . : . :
rJMFF046D23- TTTTTTCTTCAAGGCAAAAAGTAGGAGATCATTTCATTAATTAATAACGTTTTTTTTTTC
rJMFF007E23- CATTAATTAATAACGNTTTTTTTTTC
rJMSF030P12- TTTTTTTTTC
____________________________________________________________
consensus TTTTTTCTTCAAGGCAAAAAGTAGGAGATCATTTCATTAATTAATAACGTTTTTTTTTTC
. : . : . : . : . : . :
rJMCP015E09+ CCTCTACATTATGAATACATAAAGATTTTATGCCTCAAAAC
rJMFF046D23- TTTTTTTCTTTCTTCTTTTCCTCTACATTATGAACACATAAAGATTTTATGTCTCAAAAC
rJMFF007E23- TTTTTTTCTTTCTTCTTTTCCTCTACATTATGAATACATAAAGATTTTATGTCTCAAANC
rJMSF030P12- TTTTTTTCTTTCTTCTTTTCCTCTACATTANGAATACATAAAGATTTTATGCCTCAAAAC
____________________________________________________________
consensus TTTTTTTCTTTCTTCTTTTCCTCTACATTATGAATACATAAAGATTTTATGCCTCAAAAC
. : . : . : . : . : . :
rJMCP015E09+ CCCCCTTAGCTTccctacgtacaatactagtaatagcagggaatgatcACAagTaGATag
rJMFF046D23- CCCCCTTAGCTTGGGATGCATGTTATGATCATTATCGTCCCTTACTAGACATCTTGATTC
rJMFF007E23- CCCCCTTAGCTTGGGATGCNTGTTATGATCATTATCGTCCCTTACTAAACNTCTTGATTC
rJMSF030P12- CCCCCTTAGCTTGGGATGCANGTTATGATCATTATCGTCCCTTACTANACATCTTGATTC
____________________________________________________________
consensus CCCCCTTAGCTTGGGATGCATGTTATGATCATTATCGTCCCTTACTAGACATCTTGATTC
. : . : . : . : . : . :
rJMCP015E09+ aTCGGTTCACTTCGACCTCCAAGTCATTTAGCCCTCCAACTTCTTCCAATTCCTTGGGTC
rJMFF046D23- TTCGGTTCACTTCGACCTCCAAGTCATTTAGCCCTCCAACTTCTTCCAATTCCTTGGGTC
rJMFF007E23- TTCGGTTCACTTCNACCTCCAAGTCNTTTACCCCTCCAACTTCTTCCAATTCCTTGGGTC
rJMSF030P12- TTCGGTTCACTTCGACCTCCAAGTCATTTAGCCCTCCAACTTCTTCCAATTCCTTGGGTC
____________________________________________________________
consensus TTCGGTTCACTTCGACCTCCAAGTCATTTAGCCCTCCAACTTCTTCCAATTCCTTGGGTC
. : . : . : . : . : . :
rJMCP015E09+ CTAAAAACAAGCCATATGGGACACCGTTGAACTTGTCGGTATGGTGCAGCTGGTGCGCCG
rJMFF046D23- CTAAAAACAAGCCATATGGGACACCGTTGAACTTGTCGGTATGGTGCAGCTGGTGCGCCG
rJMFF007E23- CTAAAAACNANCCNTATGGGACACCGTTGAANTTGTCGGTATGGTGCAGNTGGNGCGCCG
rJMSF030P12- CTAAAAACAAGCCATATGGGACACCGTTGAACTTGTCGGTATGGNGCAGCTGGNGCGCCG
JMFN032K06+ TAAAAACAAGCCATATGGGACACCGTTGAACTTGTCGGTATGGTGCAGCTGGTGCGCCG
____________________________________________________________
consensus CTAAAAACAAGCCATATGGGACACCGTTGAACTTGTCGGTATGGTGCAGCTGGTGCGCCG
. : . : . : . : . : . :
rJMCP015E09+ C
rJMFF046D23- CGGCCACTCTCCTAAAATAAGGCACGTCGGCGATGGGCCCCACGGGGAATCGCTTGTGAA
rJMFF007E23- CGGCCNCTCTCCTAAAATAAGGCACGTCGGCGATGGNCCCCANGGGGAATCGCTTGTGAA
rJMSF030P12- CGGCCACTCTCCTAAAATAAGGCACGTCGGCNATGGGCCCCACGGGGAATCGCTTGTGAA
JMFN032K06+ CGGCCACTCTCCTAAAATAAGGCACGTCGGCGATGGGCCCCACGGGGAATCGCTTGTGAA
____________________________________________________________
consensus CGGCCACTCTCCTAAAATAAGGCACGTCGGCGATGGGCCCCACGGGGAATCGCTTGTGAA
. : . : . : . : . : . :
rJMFF046D23- CAAGCCCATCGTGGACGAACATGTAGGCCATCCCGAACACTGTGATTCCA
rJMFF007E23- CAANCCCATNGNGGACNAACNTGTAGGCCATCCCNAACACTGTGATTCCANCCCCACCTC
rJMSF030P12- CAAGCCCATCGNGGACNAACATGTAGGCCATCCCGAACACTGTGATTCCAAGCCCAGCTC
JMFN032K06+ CAAGCCCATCGTGGACGAACATGTAGGCCATCCCGAACACTGTGATTCCAAGCCCAGCTC
____________________________________________________________
consensus CAAGCCCATCGTGGACGAACATGTAGGCCATCCCGAACACTGTGATTCCAAGCCCAGCTC
. : . : . : . : . : . :
rJMFF007E23- CGAAGCANAGGCCAGGAACAAAACCTTTGTGGAAAAAACCGTAGNAAANAAAANCGATGG
rJMSF030P12- CNAAGCAAAGGCCAGGAACAANACCTTTGTGGAANAAACCGTAGGANANAANAGCGATGG
JMFN032K06+ CGAAGCAGAGGCCAGGAACAAGACCTTTGTGGAAGAAACCGTAGGAGAGAAGAGCGATGG
____________________________________________________________
consensus CGAAGCAGAGGCCAGGAACAAGACCTTTGTGGAAGAAACCGTAGGAGAGAAGAGCGATGG
. : . : . : . : . : . :
rJMFF007E23- CAGGGACAGCNTTAGTTATGGCNAAAACATCGTTGANCTCNAACGGTCCTTNTCTTG
rJMSF030P12- CAGGGACAGCGTTAGTTATGGCGAAAACATCGTTGAGCTCGAACGGNCCTTCTCTTGGTC
JMFN032K06+ CAGGGACAGCGTTAGTTATGGCGAAAACATCGTTGAGCTCGAACGGTCCTTCTCTTGGTC
JMSF030P12+ TGAGCTCGAACGGTCCTTCTCTTGGTC
JMFS151F06+ TGAGCTCGAACGGTCCTTCTCTTGGTC
____________________________________________________________
consensus CAGGGACAGCGTTAGTTATGGCGAAAACATCGTTGAGCTCGAACGGTCCTTCTCTTGGTC
. : . : . : . : . : . :
rJMSF030P12- TGTGGNGAGACTCGNGCATGTGCCATAACNAAGCGTGCCATAGCGCTCTGTGAGCCCATC
JMFN032K06+ TGTGGTGAGACTCGTGCATGTGCCATAACGAAGCGTGCCATAGCGCTCTGTGAGCCCATC
JMSF030P12+ TGTGGTGAGACTCGTGCATGTGCCATAACGAAGCGTGCCATAGCGCTCTGTGAGCCCATC
JMFS151F06+ TGTGGTGAGACTCGTGCATGTGCCATAACGAAGCGTGCCATAGCGCTCTGTGAGCCCATC
____________________________________________________________
consensus TGTGGTGAGACTCGTGCATGTGCCATAACGAAGCGTGCCATAGCGCTCTGTGAGCCCATC
. : . : . : . : . : . :
rJMSF030P12- TCGCCCAGAATTCCATTCCCACCGCGGCTCCGACGGAGAGAGCAAATGTACCGAACATCT
JMFN032K06+ TTGCCCAGAATTCCATTCCCACCGCGGCTCCGACGGAGAGAGCAAATGTACCGAACATCT
JMSF030P12+ TCGCCCAGAATTCCATTCCCACCGCGGCTCCGACGGAGAGAGCAAATGTACCGAACATCT
JMFS151F06+ TCGCCCAGAATTCCATTCCCACCGCGGCTCCGACGGAGAGAGCAAATGTACCGAACATCT
____________________________________________________________
consensus TCGCCCAGAATTCCATTCCCACCGCGGCTCCGACGGAGAGAGCAAATGTACCGAACATCT
. : . : . : . : . : . :
rJMSF030P12- CAGTATATGGAACTTCTCCTCCCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGA
JMFN032K06+ CAGTATATGGAACTTCTCCTCCCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
JMSF030P12+ CAGTATATGGAACTTCTCCTCCCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
JMFS151F06+ CAGTATATGGAACTTCTCCTCCCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
JMFS086F07+ CCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
JMFS086E08+ CCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
____________________________________________________________
consensus CAGTATATGGAACTTCTCCTCCCTCCATTTGCCAAGCGAATCTGTAATAAACAGCGAGAA
. : . : . : . : . : . :
JMFN032K06+ CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
JMSF030P12+ CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
JMFS151F06+ CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
JMFS086F07+ CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
JMFS086E08+ CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
____________________________________________________________
consensus CCGCCATGGACGTAATCCCCAAGCTCGACATCACGGCGGCGACGAGATAAGTGAAGCGCT
. : . : . : . : . : . :
JMFN032K06+ CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
JMSF030P12+ CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
JMFS151F06+ CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
JMFS086F07+ CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
JMFS086E08+ CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
____________________________________________________________
consensus CCGATCTTTTCCTGGCCAATTTCTCCGCCAAGCGAGAAGCCGAGATCTGCTTCTCTATCG
. : . : . : . : . : . :
JMFN032K06+ CTCTCTCAATCTCCTCCGCCCGGATTTCAA
JMSF030P12+ CTCTCTCAATCTCCTCCGCCCGGATTTCAACTCCTCCGGACTCTAACTTTTCATCTTCCA
JMFS151F06+ CTCTCTCAATCTCCTCCGCCCGGATTTCAACTCCTCCGGACTCTAACTTTTCATCTTCCA
JMFS086F07+ CTCTCTCAATCTCCTCCGCCCGGATTTCAACTCCTCCGGACTCTAACTTTTCATCTTCCA
JMFS086E08+ CTCTCTCAATCTCCTCCGCCCGGATTTCAACTCCTCCGGACTCTAACTTTTCATCTTCCA
____________________________________________________________
consensus CTCTCTCAATCTCCTCCGCCCGGATTTCAACTCCTCCGGACTCTAACTTTTCATCTTCCA
. : . : . : . : . : . :
JMSF030P12+ GAACGAAGCAGACCGTCAGGCTAGGTTTTCTTCGAGACCTCAGAACCGAGCTGCGAAATC
JMFS151F06+ GAACGAAGCAGACCGTCAGGCTAGGTTTTCTTCGAGACCTCAGAACCGAGCTGCGAAATC
JMFS086F07+ GAACGAAGCAGACCGTCAGGCTAGGTTTTCTTCGAGACCTCAGAACCGAGCTGCGAAATC
JMFS086E08+ GAACGAAGCAGACCGTCAGGCTAGGTTTTCTTCGAGACCTCAGAACCGAGCTGCGAAATC
____________________________________________________________
consensus GAACGAAGCAGACCGTCAGGCTAGGTTTTCTTCGAGACCTCAGAACCGAGCTGCGAAATC
. : . : . : . : . : . :
JMSF030P12+ GCCGACTTAAAGGACTAAACAGTAAACTCGGCGGGGAAGCGGAGTGAGTAGCGGGGCGGA
JMFS151F06+ GCCGACTTAAAGGACTAAACAGTAAACTCGGCGGGGAAGCGGAGTGAGTAGCGGGGCGGA
JMFS086F07+ GCCGACTTAAAGGACTAAACAGTAAACTCGGCGGGGAAGCGGAGTGAGTAGCGGGGCGGA
JMFS086E08+ GCCGACTTAAAGGACTAAACAGTAAACTCGGCGGGGAAGCGGAGTGAGTAGCGGGGCGGA
____________________________________________________________
consensus GCCGACTTAAAGGACTAAACAGTAAACTCGGCGGGGAAGCGGAGTGAGTAGCGGGGCGGA
. : . : . : . : . : . :
JMSF030P12+ CCAATGAG
JMFS151F06+ CCAATGAGAACTGGCAGCTGTAGACGGTTCGAGAGCTGGCCGCAATGGAAATTCCGACCG
JMFS086F07+ CCAATGAGAACTGGCAGCTGTAGACGGTTCGAGAGCTGGCCGCAATGGAAATTCCGACCG
JMFS086E08+ CCAATGAGAACTGGCAGCTGTAGACGGTTCGAGAGCTGGCCGCAATGGAAATTCCGACCG
____________________________________________________________
consensus CCAATGAGAACTGGCAGCTGTAGACGGTTCGAGAGCTGGCCGCAATGGAAATTCCGACCG
. : . : . : . : . : . :
JMFS151F06+ CCATAGACGGCGGAGGTTGTAAGCACGGCGTTAAGGTTAAGAGGAGAAGGGAGGAGAGA
JMFS086F07+ CCATAGACGGCGGAGGTTGTAAGCACGGCGTTAAGGTTAAGAGGAGAAGGGAGGAGAGA
JMFS086E08+ CCATAGACGGCGGAGGTTGTAAGCACGGCGTTAAGGTTAAGAGGAGAAGGGAGGAGAGAG
____________________________________________________________
consensus CCATAGACGGCGGAGGTTGTAAGCACGGCGTTAAGGTTAAGAGGAGAAGGGAGGAGAGAG