Contig 001950:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005F10Sequence577001950 (3)ref|XP_009605670.1|8e-83PREDICTED: MATH domain-containing protein At5g43560-like [Nicotiana tomentosifo
JMFS085F02Sequence592001950 (3)ref|XP_009605670.1|2e-87PREDICTED: MATH domain-containing protein At5g43560-like [Nicotiana tomentosifo
JMFS164B11Sequence582001950 (3)ref|XP_009775786.1|3e-85PREDICTED: MATH domain-containing protein At5g43560-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS005F10+                                  ATGTATCCGAATACTTGGACTTCTTTGGATCTTTATT
JMFS164B11+                                    GTATCCGAATACTTGGACTTCTTTGGATCTTTATT
JMFS085F02+                   TCCAGAAACGATGCAATGTATCCGAATACTTGGACTTCTTTGGATCTTTATT
                      ____________________________________________________________
consensus                     TCCAGAAACGATGCAATGTATCCGAATACTTGGACTTCTTTGGATCTTTATT
 
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JMFS005F10+           CACTACAGCTATTGTGAACTGGGCAAAATGACTCCACCCTGGGAGAAGCTTCTCATGATT
JMFS164B11+           CACTACAGCTATTGTGAACTGGGCAAAATGACTCCACCCTGGGAGAAGCTTCTCATGATT
JMFS085F02+           CACTACAGCTATTGTGAACTGGGCAAAATGACTCCACCCTGGGAGAAGCTTCTCATGATT
                      ____________________________________________________________
consensus             CACTACAGCTATTGTGAACTGGGCAAAATGACTCCACCCTGGGAGAAGCTTCTCATGATT
 
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JMFS005F10+           AGCCACACAAAGGAACAAAGATAGATGATTGCAAACGTCACATCCCTGGGGATAAATCAA
JMFS164B11+           AGCCACACAAAGGAACAAAGATAGATGATTGCAAACGTCACATCCCTGGGGATAAATCAA
JMFS085F02+           AGCCACACAAAGGAACAAAGATAGATGATTGCAAACGTCACATCCCTGGGGATAAATCAA
                      ____________________________________________________________
consensus             AGCCACACAAAGGAACAAAGATAGATGATTGCAAACGTCACATCCCTGGGGATAAATCAA
 
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JMFS005F10+           AATATACCATTTATAGCCGCCAACCTCAAATGCGTTACTCCGAAGTTCTCGCTTATTGAT
JMFS164B11+           AATATACCATTTATAGCCGCCAACCTCAAATGCGTTACTCCGAAGTTCTCGCTTATTGAT
JMFS085F02+           AATATACCATTTATAGCCGCCAACCTCAAATGCGTTACTCCGAAGTTCTCGCTTATTGAT
                      ____________________________________________________________
consensus             AATATACCATTTATAGCCGCCAACCTCAAATGCGTTACTCCGAAGTTCTCGCTTATTGAT
 
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JMFS005F10+           TTGTGAAAACTTATCAATCTTCCACGTATACTTTCCATACAGCTCAGACGGTTTAGGTCC
JMFS164B11+           TTGTGAAAACTTATCAATCTTCCACGTATACTTTCCATACAGCTCAGACGGTTTAGGTCC
JMFS085F02+           TTGTGAAAACTTATCAATCTTCCACGTATACTTTCCATACAGCTCAGACGGTTTAGGTCC
                      ____________________________________________________________
consensus             TTGTGAAAACTTATCAATCTTCCACGTATACTTTCCATACAGCTCAGACGGTTTAGGTCC
 
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JMFS005F10+           ACTGTCGTCATCATCATCGCTGTCCCAGTAAGGAGGTGATGTTGAGGTAATTCCATTCTC
JMFS164B11+           ACTGTCGTCATCATCATCGCTGTCCCAGTAAGGAGGTGATGTTGAGGTAATTCCATTCTC
JMFS085F02+           ACTGTCGTCATCATCATCGCTGTCCCAGTAAGGAGGTGATGTTGAGGTAATTCCATTCTC
                      ____________________________________________________________
consensus             ACTGTCGTCATCATCATCGCTGTCCCAGTAAGGAGGTGATGTTGAGGTAATTCCATTCTC
 
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JMFS005F10+           CACCTGCTCAGACGACCTCCATTCCGCCAATGCTTCACTGGACTGACAATGCTGCTCCTC
JMFS164B11+           CACCTGCTCAGACGACCTCCATTCCGCCAATGCTTCACTGGACTGACAATGCTGCTCCTC
JMFS085F02+           CACCTGCTCAGACGACCTCCATTCCGCCAATGCTTCACTGGACTGACAATGCTGCTCCTC
                      ____________________________________________________________
consensus             CACCTGCTCAGACGACCTCCATTCCGCCAATGCTTCACTGGACTGACAATGCTGCTCCTC
 
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JMFS005F10+           GCTTGATGTTTCCTCCAATGACCTTCCCGCTCCAGCCTCCTCAGTTGCAATGGTAGTCAT
JMFS164B11+           GCTTGATGTTTCCTCCAATGACCTTCCCGCTCCAGCCTCCTCAGTTGCAATGGTAGTCAT
JMFS085F02+           GCTTGATGTTTCCTCCAATGACCTTCCCGCTCCAGCCTCCTCAGTTGCAATGGTAGTCAT
                      ____________________________________________________________
consensus             GCTTGATGTTTCCTCCAATGACCTTCCCGCTCCAGCCTCCTCAGTTGCAATGGTAGTCAT
 
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JMFS005F10+           TCCGAACTCCACAAATCCAACAAAACTCCTGCAACTTCACCTCAAGCAAAGATGGGAGCT
JMFS164B11+           TCCGAACTCCACAAATCCAACAAAACTCCTGCAACTTCACCTCAAGCAAAGATGGGAGCT
JMFS085F02+           TCCGAACTCCACAAATCCAACAAAACTCCTGCAACTTCACCTCAAGCAAAGATGGGAGCT
                      ____________________________________________________________
consensus             TCCGAACTCCACAAATCCAACAAAACTCCTGCAACTTCACCTCAAGCAAAGATGGGAGCT
 
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JMFS005F10+           TTGTCAATGGCGAATGAGAAGCTGCGGGGGAGAGAAGAGAGATTTGGGAGGTACAA    
JMFS164B11+           TTGTCAATGGCGAATGAGAAGCTGCGGGGGAGAGAAGAGAGATTTGGGAGGTACAA    
JMFS085F02+           TTGTCAATGGCGAATGAGAAGCTGCGGGGGAGAGAAGAGAGATTTGGGAGGTACAAGGAG
                      ____________________________________________________________
consensus             TTGTCAATGGCGAATGAGAAGCTGCGGGGGAGAGAAGAGAGATTTGGGAGGTACAAGGAG