Contig 001948:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043J16Sequence640001948 (5)gb|AAS79593.1|1e-88putative adapitin protein [Ipomoea trifida]599002674 (2)gb|AAS79593.1|2e-18putative adapitin protein [Ipomoea trifida]
JMFS025B01Sequence636001948 (5)gb|AAS79593.1|4e-112putative adapitin protein [Ipomoea trifida]
JMFS051A05Sequence588001948 (5)gb|AAS79593.1|2e-71putative adapitin protein [Ipomoea trifida]
JMFS084F05Sequence624001948 (5)gb|AAS79593.1|2e-76putative adapitin protein [Ipomoea trifida]
JMFS134H03Sequence614001948 (5)gb|AAS79593.1|7e-79putative adapitin protein [Ipomoea trifida]

Alignment

This contig is upended


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JMFS025B01+                    GACGTAGGAGACACAATGCAGCTTTCTTCCTGACAAGTGGCCGGCAGCTAC
JMFF043J16+                                                           GCCGGCAGCTAC
                      ____________________________________________________________
consensus                      GACGTAGGAGACACAATGCAGCTTTCTTCCTGACAAGTGGCCGGCAGCTAC
 
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JMFS025B01+           TTGAAATTAGTAGCTTTTGCACATCAGGTGCTAGAGATTCAGCAAATTCCCTTCCACCTA
JMFF043J16+           TTGAAATTAGTAGCTTTGCACATCCAGGTGCTAGAGATTCAGCAAATTCCCTTCCACCTA
                      ____________________________________________________________
consensus             TTGAAATTAGTAGCTTTTGCCCTTCAGGTGCTAGAGATTCAGCAAATTCCCTTCCACCTA
 
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JMFS025B01+           TATTTCCAACCAAAGTTAAAGCTAGGCACTGAAAAGTCTCATTGCGGCCAATTATGTCAT
JMFF043J16+           TATTTCCAACCAAAGTTAAAGCTAGGCACTGAAAAGTCTCATTGCGGCCAATTATGTCAT
JMFS134H03+                                     CACTGAAAAGTCTCATTGCGGCAAATTATGTCAT
JMFS051A05+                                                          CCAATTATGTCAT
JMFS084F05+                                              GTCTCATTGCGGCCAATTATGTCAT
                      ____________________________________________________________
consensus             TATTTCCAACCAAAGTTAAAGCTAGGCACTGAAAAGTCTCATTGCGGCCAATTATGTCAT
 
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JMFS025B01+           TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
JMFF043J16+           TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
JMFS134H03+           TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
JMFS051A05+           TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
JMFS084F05+           TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
                      ____________________________________________________________
consensus             TCCGCACAGCATTGATTGCTAATCTCAAGAAATCATGATTCTCATTCAGCAAACAAGAAG
 
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JMFS025B01+           TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
JMFF043J16+           TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
JMFS134H03+           TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
JMFS051A05+           TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
JMFS084F05+           TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
                      ____________________________________________________________
consensus             TGACTATGTAACCAACCTGCTTCTCGGGATACTTTGGAGCAGATATCAAAGAAACTGCTT
 
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JMFS025B01+           CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
JMFF043J16+           CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
JMFS134H03+           CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
JMFS051A05+           CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
JMFS084F05+           CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
                      ____________________________________________________________
consensus             CCATGTGACCAAAATCCACATCATAACCAAGCATATAAATGTAAAGCATCTTCCAAACAT
 
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JMFS025B01+           ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
JMFF043J16+           ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
JMFS134H03+           ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
JMFS051A05+           ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
JMFS084F05+           ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
                      ____________________________________________________________
consensus             ATTTCTTCTTCTCATAATGAGTCAAGCCCTTTTCGTTCTTGAAGCGAGTACGGACGTTGC
 
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JMFS025B01+           CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGAATATCGC
JMFF043J16+           CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGA--ATCGC
JMFS134H03+           CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGAATATCGC
JMFS051A05+           CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGAATATCGC
JMFS084F05+           CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGAATATCGC
                      ____________________________________________________________
consensus             CCAGCTCCTTGTCGACGCGGAGGCGCTCCTGCTCTTTGTTCTGGCAATTGCGAATATCGC
 
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JMFS025B01+           TTATAAATACCGATAGACCTCTCATTCCAGAC-AACGCCATGTCCTTCGAAACTCAGATC
JMFF043J16+           TTATAAATACCGATAGACCTCTCATTCCAGAC-AACGCCATGTCCTTCGAAACTCAGATC
JMFS134H03+           TTATAAATACCGATAGACCTCTCATTCCAGAC-AACGCCATGTCCTTCGAAACTCAGATC
JMFS051A05+           TTATAAATACCGATAGACCTCTCATTCCAGACTAACGCCATGTCCTTCGAAACTCAGATC
JMFS084F05+           TTATAAATACCGATAGACCTCTCATTCCAGAC-AACGCCATGTCCTTCGAAACTCAGATC
                      ____________________________________________________________
consensus             TTATAAATACCGATAGACCTCTCATTCCAGAC-AACGCCATGTCCTTCGAAACTCAGATC
 
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JMFS025B01+           CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
JMFF043J16+           CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
JMFS134H03+           CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
JMFS051A05+           CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
JMFS084F05+           CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
                      ____________________________________________________________
consensus             CGATCCAGCGGATAAACCTCAACTTCTATCTAGATTCTAGCCCTTGAAATTCTCTCGATC
 
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JMFS025B01+           CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCC              
JMFF043J16+           CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCCTTCCACTACCAGAG
JMFS134H03+           CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCCTTCCACTACCAGAG
JMFS051A05+           CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCCTTCCACTACCAGAG
JMFS084F05+           CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCCTTCCACTACCAGAG
                      ____________________________________________________________
consensus             CAAAGGTTCCACAAGGTCTTCGCTTCAAATATAGAGTCTCCGGGCCTTCCACTACCAGAG
 
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JMFF043J16+           AAAATGCGCTTCTCTCAATTCATGTCCAATC                             
JMFS134H03+           AAAATGCGCTTCTCTCAATTCATGTCCAATCAATATACGTTATTGCTGTATGAATGTATT
JMFS051A05+           AAAATGCGCTTCTCTCAATTCATGTCCAATCAATATACGTTATTGCTGTATGAATGNATT
JMFS084F05+           AAAATGCGCTTCTCTCAATTCATGTCCAATCAATATACGTTATTGCTGTATGAATGTATT
                      ____________________________________________________________
consensus             AAAATGCGCTTCTCTCAATTCATGTCCAATCAATATACGTTATTGCTGTATGAATGTATT
 
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JMFS134H03+           TGTATGTAAAGAGTGAGGAAGGGGTGTGGTG                             
JMFS051A05+           NGNATGTAAAGAGTGAGGAAGGGGTGNGGTG                             
JMFS084F05+           TGTATGTAAAGAGTGAGGAAGGGGTGTGGTGTGATCTAGAGAGATATTGACTGAAAATAT
                      ____________________________________________________________
consensus             TGTATGTAAAGAGTGAGGAAGGGGTGTGGTGTGATCTAGAGAGATATTGACTGAAAATAT