Contig 001947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS082F06Sequence560001947 (2)ref|XP_009775317.1|5e-07PREDICTED: BEL1-like homeodomain protein 2 [Nicotiana sylvestris]
JMSF046B18Sequence235010888 (2)691001947 (2)ref|XP_009775317.1|2e-42PREDICTED: BEL1-like homeodomain protein 2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF046B18+                                            TCATCCGTATCCAACGGATGCTGACA
                      ____________________________________________________________
consensus                                               TCATCCGTATCCAACGGATGCTGACA
 
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rJMSF046B18+          AGCATATGTTGGCCACCCAGACTGGCTTAACTCGTAACCAGGTTTCAAACTGGTTCATCA
                      ____________________________________________________________
consensus             AGCATATGTTGGCCACCCAGACTGGCTTAACTCGTAACCAGGTTTCAAACTGGTTCATCA
 
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rJMSF046B18+          ATGCCCGAGTTCGAGTTTGGAAGCCCATGGTTGAAGAAATACACATGCTCGAGACTAAAG
                      ____________________________________________________________
consensus             ATGCCCGAGTTCGAGTTTGGAAGCCCATGGTTGAAGAAATACACATGCTCGAGACTAAAG
 
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rJMSF046B18+          CGATGTCAAATGTTGGAAAACCCCAAGTCACAAGTGCAACAGAAGGCGCAACGACCCAAC
                      ____________________________________________________________
consensus             CGATGTCAAATGTTGGAAAACCCCAAGTCACAAGTGCAACAGAAGGCGCAACGACCCAAC
 
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rJMSF046B18+          ACTTGAACGGTTTCGCCTTCCAAAACGAAAGCCAATACTCAAACCGGCTGAGCATGAGAG
                      ____________________________________________________________
consensus             ACTTGAACGGTTTCGCCTTCCAAAACGAAAGCCAATACTCAAACCGGCTGAGCATGAGAG
 
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rJMSF046B18+          GAATACCCCCGACCCCGGGCCTGCAAGCAGAATGCTGCACGGGGATTGGCGAAAGATCAC
JMFS082F06+                                                  CGGGGATTGGCGAAAGATCAC
                      ____________________________________________________________
consensus             GAATACCCCCGACCCCGGGCCTGCAAGCAGAATGCTGCACGGGGATTGGCGAAAGATCAC
 
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rJMSF046B18+          ACCCCGCTAGCTGGAGCACTGCTCAAGAAAAACAATCGAGGATCAACTGTCACATTCCTG
JMFS082F06+           ACCCCGCTAGCTGGAGCACTGCTCAAGAAAAACAATCGAGGATCAACTGTCACATTCCTG
                      ____________________________________________________________
consensus             ACCCCGCTAGCTGGAGCACTGCTCAAGAAAAACAATCGAGGATCAACTGTCACATTCCTG
 
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rJMSF046B18+          CAGCAGCAGCTGCTGGTATGGATGGACCGCTCATGGGTTTCATGCCTTACCATCATCAAA
JMFS082F06+           CAGCAGCAGCTGCTGGTATGGATGGACCGCTCATGGGTTTCATGCCTTACCATCATCAAA
                      ____________________________________________________________
consensus             CAGCAGCAGCTGCTGGTATGGATGGACCGCTCATGGGTTTCATGCCTTACCATCATCAAA
 
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rJMSF046B18+          ACAACCTCGAAATCGGGGGCCTTGGATCTGTATCGCTCACGCTGGGGCTGAGGCAGAGCG
JMFS082F06+           ACAACCTCGAAATCGGGGGCCTTGGATCTGTATCGCTCACGCTGGGGCTTAGGCAGAGCG
                      ____________________________________________________________
consensus             ACAACCTCGAAATCGGGGGCCTTGGATCTGTATCGCTCACGCTGGGGCTTAGGCAGAGCG
 
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rJMSF046B18+          CCGCTGAGGGAGTGCAACATGAACCTCACCAGCATTTAGGAGGTCAAATCATCCATGATT
JMFS082F06+           CCGCTGAGGGAGTGCAACATGAACCTCACCAGCATTTAGGAGGTCAAATCATCCATGATT
                      ____________________________________________________________
consensus             CCGCTGAGGGAGTGCAACATGAACCTCACCAGCATTTAGGAGGTCAAATCATCCATGATT
 
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rJMSF046B18+          ACCTTGGTTAAGTCTAGGTTATGTTGGAAATAAGGAAAAAACTACAATTAATCCTCTACG
JMFS082F06+           ACCTTGGTTAAGTCTAGGTTATGTTGGAAATAAGGAAAAAACTACAATTAATCCTCTA-G
                      ____________________________________________________________
consensus             ACCTTGGTTAAGTCTAGGTTATGTTGGAAATAAGGAAAAAACTACAATTAATCCTCTACG
 
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rJMSF046B18+          TGATTGAATTGCTACAAAGTGGGTCATCATTATCCTCTTTAAA                 
JMFS082F06+           TGATTGAATTGCTACAAAGTGGGTCATCATTATCCTCTTTAAACTGTATGATAAATGACA
                      ____________________________________________________________
consensus             TGATTGAATTGCTACAAAGTGGGTCATCATTATCCTCTTTAAACTGTATGATAAATGACA
 
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JMFS082F06+           CTTGACAATGATAAACCTCAAGTGAAAAAAAACATAAATATGCACATGTTAGCAATCTAT
                      ____________________________________________________________
consensus             CTTGACAATGATAAACCTCAAGTGAAAAAAAACATAAATATGCACATGTTAGCAATCTAT
 
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JMFS082F06+           AAGAAAGAGCTACTATATTTAGCTCACTTTGGTTGGCAGGTTTATTTGTTTGTTTCTGGG
                      ____________________________________________________________
consensus             AAGAAAGAGCTACTATATTTAGCTCACTTTGGTTGGCAGGTTTATTTGTTTGTTTCTGGG
 
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JMFS082F06+           CTTCTTGTTCTGTATCTCCATTTCCCTTTTGTAATACTAGCGATTTATTTGATTTATGAG
                      ____________________________________________________________
consensus             CTTCTTGTTCTGTATCTCCATTTCCCTTTTGTAATACTAGCGATTTATTTGATTTATGAG