Contig 001940:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS007F03Sequence525001940 (2)gb|ACC60967.1|1e-103phytochrome C [Vitis vinifera]
JMFS074F01Sequence625001940 (2)gb|KDO41032.1|3e-128hypothetical protein CISIN_1g001215mg [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS007F03+ GGTATATCAGTAGCAGGGTAATG
JMFS074F01+ GTGGTATATCAGTAGCAGGGTAATG
                      ____________________________________________________________
consensus GTGGTATATCAGTAGCAGGGTAATG
 
. : . : . : . : . : . :
JMFS007F03+ CAAGCCAAGATAAGGTTCAAGATCAGGCTTGCGGCATTCTGCAACAACTTCCCCATGCTC
JMFS074F01+ CAAGCCAAGATAAGGTTCAAGATCAGGCTTGCGGCATTCTGCAACAACTTCCCCATGCTC
                      ____________________________________________________________
consensus CAAGCCAAGATAAGGTTCAAGATCAGGCTTGCGGCATTCTGCAACAACTTCCCCATGCTC
 
. : . : . : . : . : . :
JMFS007F03+ ATCCTCATGGAATTTATAAACCATAACTCGGTCATAACCTGTCAAATCCCTTACTTCTCT
JMFS074F01+ ATCCTCATGGAATTTATAAACCATAACTCGGTCATAACCTGTCAAATCCCTTACTTCTCT
                      ____________________________________________________________
consensus ATCCTCATGGAATTTATAAACCATAACTCGGTCATAACCTGTCAAATCCCTTACTTCTCT
 
. : . : . : . : . : . :
JMFS007F03+ AACTAACACATCACACAACAATGATATATCTCCACTTGGCAGTGATTGCAACTTCGAAAT
JMFS074F01+ AACTAACACATCACACAACAATGATATATCTCCACTTGGCAGTGATTGCAACTTCGAAAT
                      ____________________________________________________________
consensus AACTAACACATCACACAACAATGATATATCTCCACTTGGCAGTGATTGCAACTTCGAAAT
 
. : . : . : . : . : . :
JMFS007F03+ GGCTTTAGCTGCTAGTTTATATGATTTCAATGCTCCAGCAGCTGTCACTGGAACATCTGC
JMFS074F01+ GGCTTTAGCTGCTAGTTTATATGATTTCAATGCTCCAGCAGCTGTCACTGGAACATCTGC
                      ____________________________________________________________
consensus GGCTTTAGCTGCTAGTTTATATGATTTCAATGCTCCAGCAGCTGTCACTGGAACATCTGC
 
. : . : . : . : . : . :
JMFS007F03+ TGGATTGACAGGCTCCAAATCTATAACTAATCCAACATCAATTTGGTGTAAAATTGCATA
JMFS074F01+ TGGATTGACAGGCTCCAAATCTATAACTAATCCAACATCAATTCGGTGTAAAATTGCATA
                      ____________________________________________________________
consensus TGGATTGACAGGCTCCAAATCTATAACTAATCCAACATCAATTTGGTGTAAAATTGCATA
 
. : . : . : . : . : . :
JMFS007F03+ AAAAGGCTTACCCGAATTTTTGCAGTGCACCAGAATAGGATTAATCAAACTAACTTCCTC
JMFS074F01+ AAAAGGCTTACCCGAATTTTTGCAGTGCACCAGAATAGGATTAATCAAACTAACTTCCTC
                      ____________________________________________________________
consensus AAAAGGCTTACCCGAATTTTTGCAGTGCACCAGAATAGGATTAATCAAACTAACTTCCTC
 
. : . : . : . : . : . :
JMFS007F03+ AAAACTTGCTGCTTTTTCAAGTGCAGCAGCACCAGTTGACCGAAACAGTGTCCTAACATT
JMFS074F01+ AAAACTTGCTGCTTTTTCAAGTGCAGCAGCACCAGTTGACCGAAACAGTGTCCTAACATT
                      ____________________________________________________________
consensus AAAACTTGCTGCTTTTTCAAGTGCAGCAGCACCAGTTGACCGAAACAGTGTCCTAACATT
 
. : . : . : . : . : . :
JMFS007F03+ GGTGCCAATAGTCAGAGCTTCCTGCTGTTCAATGCTTGGAACTGCATGTGGTGCCAAATC
JMFS074F01+ GGTGCCAATAGTCAGAGCTTCCTGCTGTTCAATGCTTGGAACTGCATGTGGTGCCAAATC
                      ____________________________________________________________
consensus GGTGCCAATAGTCAGAGCTTCCTGCTGTTCAATGCTTGGAACTGCATGTGGTGCCAAATC
 
. : . : . : . : . : . :
JMFS007F03+ CAGCATTTCTGGTGCATTTTCA
JMFS074F01+ CAGCATTTCTGGTGCATTTTCACTAAATCCAAGGACAGAAAAGTTCTGCTCATCAACGGC
                      ____________________________________________________________
consensus CAGCATTTCTGGTGCATTTTCACTAAATCCAAGGACAGAAAAGTTCTGCTCATCAACGGC
 
. : . : . : . : . : . :
JMFS074F01+ TATCAAGCAGCCAAATGGTTGTATAAGACTTCCTCTTTGAATCTTCTGGAGATAAGCAGA
                      ____________________________________________________________
consensus TATCAAGCAGCCAAATGGTTGTATAAGACTTCCTCTTTGAATCTTCTGGAGATAAGCAGA