Contig 001937:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033F01Sequence227001937 (3)gb|AHM25607.1|1e-12WD40 repeat protein [Ipomoea batatas]733001937 (3)dbj|BAE94397.1|3e-135WD40 repeat protein [Ipomoea purpurea] dbj|BAE94399.1| WD40 repeat protein [Ipom
JMFS073C01Sequence641001937 (3)dbj|BAE94397.1|1e-116WD40 repeat protein [Ipomoea purpurea] dbj|BAE94399.1| WD40 repeat protein [Ipom

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-                              ACTTTGACACTAATAAAATTGTACTGTAAATAAGAAGACA
                      ____________________________________________________________
consensus                                 ACTTTGACACTAATAAAATTGTACTGTAAATAAGAAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GACAGACTGAGATCATAACGAACCGGATTTGAAGTGAAGTGAAGTTTGTAGGGTGGCACA
                      ____________________________________________________________
consensus             GACAGACTGAGATCATAACGAACCGGATTTGAAGTGAAGTGAAGTTTGTAGGGTGGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GTGACACACTCACAACTACAGTCACACCCTGAGAATCTGAAGCTTTTTGAGAATGCAATG
                      ____________________________________________________________
consensus             GTGACACACTCACAACTACAGTCACACCCTGAGAATCTGAAGCTTTTTGAGAATGCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GTTACCCAATCAGGCTGGGAGGATGACCACTGAAGCTGTTCAATTTCAGCACCAGCAGTA
                      ____________________________________________________________
consensus             GTTACCCAATCAGGCTGGGAGGATGACCACTGAAGCTGTTCAATTTCAGCACCAGCAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          TAAGCGAGAATGGGATCCAGTCCCCCTTCAATGGGCTGACCCATGGAGGAGAGGTCCCAG
                      ____________________________________________________________
consensus             TAAGCGAGAATGGGATCCAGTCCCCCTTCAATGGGCTGACCCATGGAGGAGAGGTCCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          ATGAGTGCCTGGGAGTCATCACCTGCAGTGCAAATGTGGCAAGAGCTGTGAGGCGCCCAG
                      ____________________________________________________________
consensus             ATGAGTGCCTGGGAGTCATCACCTGCAGTGCAAATGTGGCAAGAGCTGTGAGGCGCCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GCAACGGCATTTACGCTCGCCTGGTGCCTCTGTAATTCAACCACAGGCAGTGTTGGGAAT
                      ____________________________________________________________
consensus             GCAACGGCATTTACGCTCGCCTGGTGCCTCTGTAATTCAACCACAGGCAGTGTTGGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          CTGATATCTAGTACAACAACCTTGGAGCTGTCCATGATGATGGTAGCCATGTACCTAGGG
                      ____________________________________________________________
consensus             CTGATATCTAGTACAACAACCTTGGAGCTGTCCATGATGATGGTAGCCATGTACCTAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          TCCTGCTTGTTCCAACCCAGGCGAACAAGAGGGGTATCCGGCTCGGAGCTCTCATATATA
                      ____________________________________________________________
consensus             TCCTGCTTGTTCCAACCCAGGCGAACAAGAGGGGTATCCGGCTCGGAGCTCTCATATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          ATAGTGGAGTGTTCTTTGTCGCGAAGATCAAACACCCTGACAGAGCCATCGGCTGAGACA
                      ____________________________________________________________
consensus             ATAGTGGAGTGTTCTTTGTCGCGAAGATCAAACACCCTGACAGAGCCATCGGCTGAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GAGGCGAAGACGCCAACGCCTCCCCATGCAATGTCATAAACCTCCTTGTCGTGGGCGATG
                      ____________________________________________________________
consensus             GAGGCGAAGACGCCAACGCCTCCCCATGCAATGTCATAAACCTCCTTGTCGTGGGCGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          AGTTGAGTGTCAACGGTCTCCCTCTCAATGTCCCAAATGGTACAGGTGGTGTCGATACTG
JMFS073C01+                              CCCTCTCAATGTCCCAAATGGTACAGGTGGTGTCGATACTG
                      ____________________________________________________________
consensus             AGTTGAGTGTCAACGGTCTCCCTCTCAATGTCCCAAATGGTACAGGTGGTGTCGATACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033F01-          GAAGTGCCTATGCGCTTANGCTCTGCCTCGTTC                           
JMFS073C01+           GAAGTGCCTATGCGCTTAGGCTCTGCCTCGTTCCAGTCAAAGGAGGTTAGAGGACCGGAG
                      ____________________________________________________________
consensus             GAAGTGCCTATGCGCTTAGGCTCTGCCTCGTTCCAGTCAAAGGAGGTTAGAGGACCGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS073C01+           AACTCACTGTTGCGGTTGTTGTTGAGGAGGGTTTTGATTTCGACGCGGGAGTTGTCGTCG
                      ____________________________________________________________
consensus             AACTCACTGTTGCGGTTGTTGTTGAGGAGGGTTTTGATTTCGACGCGGGAGTTGTCGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS073C01+           GCGACGCGCCAAACACGGAGATAGTCGCTGGAGGTGGCGATGAGGTCAGGCTTCTGGCAT
                      ____________________________________________________________
consensus             GCGACGCGCCAAACACGGAGATAGTCGCTGGAGGTGGCGATGAGGTCAGGCTTCTGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS073C01+           TCCTTGTCGGGAATGAAGATGACTTTGGTGGGAGGGTAAGGGTGCTCAAAGGAGAGATTA
                      ____________________________________________________________
consensus             TCCTTGTCGGGAATGAAGATGACTTTGGTGGGAGGGTAAGGGTGCTCAAAGGAGAGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS073C01+           GGATCGGAGCGGATCTCGCCATTGGAGTCGTCCAGCTGAACAATTTCGACGCGATTGGGG
                      ____________________________________________________________
consensus             GGATCGGAGCGGATCTCGCCATTGGAGTCGTCCAGCTGAACAATTTCGACGCGATTGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS073C01+           TACTGTTCCAGGAGGCTGGCGATGGCGAGGCGGTACCTTTTGTCCTTGCGGACGCTCCAA
                      ____________________________________________________________
consensus             TACTGTTCCAGGAGGCTGGCGATGGCGAGGCGGTACCTTTTGTCCTTGCGGACGCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033F01+              ATGGCGTAGATGTGCCAGGGGGCCTCGTAGGTGTAGATCTCGGAACGCCTCTGCTGC
JMFS073C01+           TTCATGGCGTAGATGTGCCAGGGGGCCTCGTAGGTGTAGATCTCGGAACGCCTCTGCTGT
                      ____________________________________________________________
consensus             TTCATGGCGTAGATGTGCCAGGGGGCCTCGTAGGTGTAGATCTCGGAACGCCTCTGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033F01+           TCGTCGGACCCGTCCTGGTTAGGATCGCTGCTCGCCCCCATCTCTCAAACCCTAATAATT
JMFS073C01+           TCGTCGGACCCGTCCTGGTTAGGATCGCTGCTCGCCCCCATCTCTCAAACCCTAATAATT
                      ____________________________________________________________
consensus             TCGTCGGACCCGTCCTGGTTAGGATCGCTGCTCGCCCCCATCTCTCAAACCCTAATAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033F01+           CTTCTTCTTCTTCTTCTTCTTCAATTGCACCTGCTCACTCACTACTATACTCTACTGGAC
JMFS073C01+           CTTCTTCTTCTTCTTCTTCTTCAATTGCACCTGCTCACTCACTACTATACTCTACTGGAC
                      ____________________________________________________________
consensus             CTTCTTCTTCTTCTTCTTCTTCAATTGCACCTGCTCACTCACTACTATACTCTACTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033F01+           TTGGAGACTTGAGAGCAGCAATTCACTCGAATTCAAATCAATGGAATAGA          
JMFS073C01+           TTGGAGACTTGAGAGCAGCAATTCACTCGAATTCAAATCAATGGAATAGATTATGGATCA
                      ____________________________________________________________
consensus             TTGGAGACTTGAGAGCAGCAATTCACTCGAATTCAAATCAATGGAATAGATTATGGATCA