Contig 001936:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN037B13Sequence567001936 (5)ref|XP_004249485.1|4e-71PREDICTED: cell division cycle protein 48 homolog [Solanum lycopersicum]
JMFS037G05Sequence602001936 (5)ref|XP_003625676.1|2e-127Cell division control protein-like protein [Medicago truncatula]
JMFS037H01Sequence603001936 (5)ref|XP_003625676.1|4e-128Cell division control protein-like protein [Medicago truncatula]
JMFS072H05Sequence618001936 (5)ref|XP_003625676.1|3e-126Cell division control protein-like protein [Medicago truncatula]
JMSF043G19Sequence791017921ref|XP_007027381.1|2e-125ATPase, AAA-type, CDC48 protein isoform 1 [Theobroma cacao] gb|EOY07883.1| ATPas598001936 (5)ref|XP_004249485.1|8e-72PREDICTED: cell division cycle protein 48 homolog [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN037B13+                                                               CTTAAATA
rJMSF043G19-                AACAGAGTTAAAATTACAGATGAATAAAAAGCAGCAACAAAACGAACTTAAATA
                      ____________________________________________________________
consensus                   AACAGAGTTAAAATTACAGATGAATAAAAAGCAGCAACAAAACGAACTTAAATA
 
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JMFN037B13+           TATGTTCGAATATAACTAACAACGTGACAACCTAACTAACTATATAAGTCATCTTCATCA
rJMSF043G19-          TATGTTCGAATATAACTAACAACCTGACAACCTAACTAACTATATAAGTCATCTTCATCA
                      ____________________________________________________________
consensus             TATGTTCGAATATAACTAACAACGTGACAACCTAACTAACTATATAAGTCATCTTCATCA
 
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JMFN037B13+           GCTCCGCCGGCTGAAGTTGCAAAAGGATCAGATCCAGTGGCAGCTCCTCCCCCTGTGCTG
rJMSF043G19-          GCTCCACCGGCTGAAGTTGCAAAAGGATCAGATCCAGTGGCAGCTCCTCCCCCTGTGCTG
                      ____________________________________________________________
consensus             GCTCCGCCGGCTGAAGTTGCAAAAGGATCAGATCCAGTGGCAGCTCCTCCCCCTGTGCTG
 
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JMFN037B13+           GCCTCTGAGAATCGGAATTCAGAACCGAAACCTCGGGACTGCTGCAGGGTTTGTGCAAAT
rJMSF043G19-          GCCTCTGAGAATCGGAATTCAGAACCGAAACCTCGGGACTGCTGCAGGGTTTGTGCAAAT
                      ____________________________________________________________
consensus             GCCTCTGAGAATCGGAATTCAGAACCGAAACCTCGGGACTGCTGCAGGGTTTGTGCAAAT
 
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JMFN037B13+           GCCTGGTACTTCCTGATATCAGCATCGCTCACGCTCCTGCGAGCGTACTTCATTGATTCT
rJMSF043G19-          GCCTGGTACTTCCTGATATCAGCATCGCTCACGCTCCTGCGAGCGTACTTCATTGATTCT
                      ____________________________________________________________
consensus             GCCTGGTACTTCCTGATATCAGCATCGCTCACGCTCCTGCGAGCGTACTTCATTGATTCT
 
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JMFN037B13+           TCAAAATGAGCAGCCTTGATCTCGGCTACCTCATCTTCAACGTCCTCCTCCATGGCCTCG
rJMSF043G19-          TCAAAATGAGCAGCCTTGATCTCGGCTACCTCATCTTCAACGTCCTCCTCCATGGCCTCG
                      ____________________________________________________________
consensus             TCAAAATGAGCAGCCTTGATCTCGGCTACCTCATCTTCAACGTCCTCCTCCATGGCCTCG
 
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JMFN037B13+           GGGTTCTCCCTCCTCTTCTTTTCCCTCTCGATATCCTTTTCAATGTTCTCTCTGATGGCA
rJMSF043G19-          GGGTTCTCCCTCCTCTTCTTTTCCCTCTCGATATCCTTTTCAATGTTCTCTCTGATGGCA
                      ____________________________________________________________
consensus             GGGTTCTCCCTCCTCTTCTTTTCCCTCTCGATATCCTTTTCAATGTTCTCTCTGATGGCA
 
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JMFN037B13+           TATTTGCAAGAGCGCTGGCAGATTTCTGTGATGTCGGCCCCGCTGAAGCCTTGAGTGTAT
rJMSF043G19-          TATTTGCAAGAGCGCTGGCAGATTTCTGTGATGTCGGCCCCGCTGAAGCCTTGAGTGTAT
JMFS037H01+                                                     CTGAAGCCTTGAGTGTAT
JMFS037G05+                                                     CTGAAGCCTTGAGTGTAT
                      ____________________________________________________________
consensus             TATTTGCAAGAGCGCTGGCAGATTTCTGTGATGTCGGCCCCGCTGAAGCCTTGAGTGTAT
 
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JMFN037B13+           TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
rJMSF043G19-          TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
JMFS037H01+           TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
JMFS037G05+           TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
JMFS072H05+           TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
                      ____________________________________________________________
consensus             TTGGCAAGAGCTCTGAGGTCTACGTCCTTGGAAACGGGAGACTTCCTCAGGCACGCCTTG
 
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JMFN037B13+           AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
rJMSF043G19-          AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
JMFS037H01+           AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
JMFS037G05+           AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
JMFS072H05+           AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
                      ____________________________________________________________
consensus             AAAATTTGATGGCGGGAGTCTTCGTCAGGAAGAGGAATGTAAATCAATTGGTCAAGACGG
 
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rJMSF043G19-          CCAG                                                        
JMFS037H01+           CCAGGACGCAGAAGAGCAGGATCAATTATGTCTGGCCTGTTTGTAGCCCCAATAATGAAA
JMFS037G05+           CCAGGACGCAGAAGAGCAGGATCAATTATGTCTGGCCTGTTTGTAGCCCCAATAATGAAA
JMFS072H05+           CCAGGACGCAGAAGAGCAGGATCAATTATGTCTGGCCTGTTTGTAGCCCCAATAATGAAA
                      ____________________________________________________________
consensus             CCAGGACGCAGAAGAGCAGGATCAATTATGTCTGGCCTGTTTGTAGCCCCAATAATGAAA
 
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JMFS037H01+           ACTGTCTTCTTAGCATTCATTCCATCCATTTCTGTGAGGAGTTGATTTAAGACCCTATCA
JMFS037G05+           ACTGTCTTCTTAGCATTCATTCCATCCATTTCTGTGAGGAGTTGATTTAAGACCCTATCA
JMFS072H05+           ACTGTCTTCTTAGCATTCATTCCATCCATTTCTGTGAGGAGTTGATTTAAGACCCTATCA
                      ____________________________________________________________
consensus             ACTGTCTTCTTAGCATTCATTCCATCCATTTCTGTGAGGAGTTGATTTAAGACCCTATCA
 
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JMFS037H01+           GCAGCCCCACCGGCATCTCCTACCGAACTTCCTCTCTGTGTAGCAATTGAATCCAATTCA
JMFS037G05+           GCAGCCCCACCGGCATCTCCTACCGAACTTCCTCTCTGTGTAGCAATTGAATCCAATTCA
JMFS072H05+           GCAGCCCCACCGGCATCTCCTACGGAACTTCCTCTCTGTGTAGCAATTGAATCCAATTCA
                      ____________________________________________________________
consensus             GCAGCCCCACCGGCATCTCCTACCGAACTTCCTCTCTGTGTAGCAATTGAATCCAATTCA
 
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JMFS037H01+           TCAAAGAATAGGACGCAAGGAGCAGATTGGCGAGCCTTGTCAAATATCTCTCTAACATTG
JMFS037G05+           TCAAAGAATAGGACGCAAGGAGCAGATTGGCGAGCCTTGTCAAATATCTCTCTAACATTG
JMFS072H05+           TCAAAGAATAGGACGCAAGGAGCAGATTGGCGAGCCTTGTCAAATATCTCTCTAACATTG
                      ____________________________________________________________
consensus             TCAAAGAATAGGACGCAAGGAGCAGATTGGCGAGCCTTGTCAAATATCTCTCTAACATTG
 
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JMFS037H01+           GCCTCACTCTCCCCGAACCACATTGTAAGCAACTCTGGGCCTTTGACACTGATGAAATTT
JMFS037G05+           GCCTCACTCTCCCCGAACCACATTGTAAGCAACTCTGGGCCTTTGACACTGATGAAATTT
JMFS072H05+           GCCTCACTCTCCCCGAACCACATTGTAAGCAACTCTGGGCCTTTGACACTGATGAAATTT
                      ____________________________________________________________
consensus             GCCTCACTCTCCCCGAACCACATTGTAAGCAACTCTGGGCCTTTGACACTGATGAAATTT
 
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JMFS037H01+           GCTTGGCATTCATTGGCAATAGCCTTGGCCAACAAAGTCTTACCACATCCAGGCGGGCCG
JMFS037G05+           GCTTGGCATTCATTGGCAATAGCCTTGGCCAACAAAGTCTTACCACATCCAGGCGGGCCG
JMFS072H05+           GCTTGGCATTCATTGGCAATAGCCTTGGCCAACAAAGTCTTACCACATCCAGGCGGGCCG
                      ____________________________________________________________
consensus             GCTTGGCATTCATTGGCAATAGCCTTGGCCAACAAAGTCTTACCACATCCAGGCGGGCCG
 
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JMFS037H01+           TAGAAAAGAACTCCCTTCGACGGAGACATTCCAAACTTCTCAAACTTCTCGGGATGCTCC
JMFS037G05+           TAGAAAAGAACTCCCTTCGACGGAGACATTCCAAACTTCTCAAACTTCTCGGGATGCTCC
JMFS072H05+           TAGAAAAGAACTCCCTTCGACGGAGACATTCCAAACTTCTCAAACTTCTCGGGATGCTCC
                      ____________________________________________________________
consensus             TAGAAAAGAACTCCCTTCGACGGAGACATTCCAAACTTCTCAAACTTCTCGGGATGCTCC
 
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JMFS037H01+           ACTGGATATTGTACAGTCTCTTGGAGCTCCCGCTTGACATTTTC                
JMFS037G05+           ACTGGATATTGTACAGTCTCTTGGAGCTCCCGCTTGACATTTTC                
JMFS072H05+           ACTGGATATTGTACAGTCTCTTGGAGCTCCCGCTTGACATTTTCTAGGCCACCAATATCT
                      ____________________________________________________________
consensus             ACTGGATATTGTACAGTCTCTTGGAGCTCCCGCTTGACATTTTCTAGGCCACCAATATCT