Contig 001935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005F09Sequence585001935 (4)emb|CDO99847.1|8e-79unnamed protein product [Coffea canephora]
JMFS056G01Sequence567001935 (4)emb|CDO99847.1|3e-40unnamed protein product [Coffea canephora]
JMFS071E10Sequence556001935 (4)emb|CDO99847.1|6e-46unnamed protein product [Coffea canephora]
JMFS093A12Sequence623001935 (4)emb|CDO99847.1|5e-67unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS005F09+                                                                  ATCGA
                      ____________________________________________________________
consensus                                                                    ATCGA
 
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JMFS005F09+           CTTTTTGGATCCATGTTACAGACCATTAAAGGGCCAGAAACAAAAGCAAAGAGATCCCAG
                      ____________________________________________________________
consensus             CTTTTTGGATCCATGTTACAGACCATTAAAGGGCCAGAAACAAAAGCAAAGAGATCCCAG
 
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JMFS005F09+           AGTCTTGTTGGCCTTGTCCACTTCAATAATGCATTGTATACTGCACGTCTCTGCTTTGTT
JMFS056G01+                       CTTGTCCACTTCAATAATGCATTGTATCCTGCACGTCTCTGCTTTGTT
JMFS093A12+           AGTCTTGTTGGCCTTGTCCACTTCAATAATGCATTGTATACTGCACGTCTCTGCTTTGTT
                      ____________________________________________________________
consensus             AGTCTTGTTGGCCTTGTCCACTTCAATAATGCATTGTATACTGCACGTCTCTGCTTTGTT
 
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JMFS005F09+           CGAGGCCTAAAACCAAATACAATTATTCTCATATCTTTGCCTATGACCTGAAGCAGGCGC
JMFS056G01+           CGAGGCCTATAACCAAATACAATTATTCTCATATGTTTGCATATGACCTGAAGCAGGCCC
JMFS093A12+           CGAGGCCTAAAACCAAATACAATTATTCTCATATCTTTGCCTATGACCTGAAGCAGGCGC
JMFS071E10+                                                     ATGACCTGAAGCAGGCGC
                      ____________________________________________________________
consensus             CGAGGCCTAAAACCAAATACAATTATTCTCATATCTTTGCCTATGACCTGAAGCAGGCGC
 
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JMFS005F09+           CGGGATGGATTCTTGTCTGACTGATGAGCAGCAGAGGGAAGCTTCATAACCATTTTGTTA
JMFS056G01+           CTGGATGGATTCTTGTATGACTGTCGAGCAGCAGAGGAAAGCTTCATAGCCATTATGTTA
JMFS093A12+           CGGGATGGATTCTTGTCTGACTGACGAGCAGCAGAGGGAAGCTTCATAACCATTTTGTTA
JMFS071E10+           CGGGATGGATTCTTGTCTGACTGACGAGCAGCAGAGGGAAGCTTCATAACCATTTTGTTA
                      ____________________________________________________________
consensus             CGGGATGGATTCTTGTCTGACTGACGAGCAGCAGAGGGAAGCTTCATAACCATTTTGTTA
 
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JMFS005F09+           AACTTCTCAATAGTTGCCAGTGCTATAGTGCCCAGTGCAATGATGTCCCTTGATCCTTCA
JMFS056G01+           AACTTCTCAATAGTTGCCAGCGTTATAGTGCCCAGTGCAATGATGTCCCTTGATCCTTCC
JMFS093A12+           AACTTCTCAATAGTTGCCAGTGCTATAGTGCCCAGTGCAATGATGTCCCTTGATCCTTCA
JMFS071E10+           AACTTCTCAATAGTTGCCAGTGCTATAGTGCCCAGTGCAATGATGTCCCTTGATCCTTCA
                      ____________________________________________________________
consensus             AACTTCTCAATAGTTGCCAGTGCTATAGTGCCCAGTGCAATGATGTCCCTTGATCCTTCA
 
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JMFS005F09+           CTCAAAAATAGAAGTCGAAAATTTGTAACAAATA-AGGTTCCAGCTTCATCGGTGTTAAC
JMFS056G01+           CTCAAATATAGTAGTCGTAAATTTGTAACCAATATAGGTTCCAGCTTCATCGGTGTTAAC
JMFS093A12+           CTCAAAAATAGAAGTCGAAAATTTGTAACAAATA-AGGTTCCAGCTTCATCGGTGTTAAC
JMFS071E10+           CTCAAAAATAGAAGTCGAAAATTTGTAACAAATA-AGGTTCCAGCTTCATCGGTGTTAAC
                      ____________________________________________________________
consensus             CTCAAAAATAGAAGTCGAAAATTTGTAACAAATA-AGGTTCCAGCTTCATCGGTGTTAAC
 
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JMFS005F09+           AAGAACAATGCCATTTCCCTCTACAATGACCTGCTCAGCTGGAAGCAAGAACTTCTTAAT
JMFS056G01+           AAGAACGATGCCATTTCCCTCTTCAATGACTTGGTCAGATGGAAGCAAGAAATTGTTCAT
JMFS093A12+           AAGAACAATGCCATTTCCCTCTACAATGACCTGCTCAGCTGGAAGCAAGAACTTCTTAAT
JMFS071E10+           AAGAACAATGCCATTTCCCTCTACAATGACCTGCTCAGCTGGAAGCAAGAACTTCTTAAT
                      ____________________________________________________________
consensus             AAGAACAATGCCATTTCCCTCTACAATGACCTGCTCAGCTGGAAGCAAGAACTTCTTAAT
 
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JMFS005F09+           TCCCTGCGACACCGACCTCGAAAATGGTTCAATTTTGGTCCATTCAAGGGCGTCCCAGCT
JMFS056G01+           TCCATCCGACTACGACCTTGAAAATGGTTCAATTTTGGTCCATTCAAGGGCGTCCCAGCT
JMFS093A12+           TCCCTGCGACACCGACCTCGAAAATGGTTCAATTTTGGTCCATTCAAGGGCGTCCCAGCT
JMFS071E10+           TCCCTGCGACACCGACCTCGAAAATGGTTCAATTTTGGTCCATTCAAGGGCGTCCCAGCT
                      ____________________________________________________________
consensus             TCCCTGCGACACCGACCTCGAAAATGGTTCAATTTTGGTCCATTCAAGGGCGTCCCAGCT
 
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JMFS005F09+           TCCGGCGCCTTCAATCCTCTCGGACTCGGCGAATCGAGTCCCAGGGTCATGGAAC     
JMFS056G01+           TCCGGCGCCTTCAATCCTGTTGGACTCGCCGAATCGAGTCCCAGGGTCATGGAACAAGAT
JMFS093A12+           TCCGGCGCCTTCAATCCTCTCGGACTCGGCGAATCGAGTCCCAGGGTCATGGAACGAGGC
JMFS071E10+           TCCGGCGCCTTCAATCCTCTCGGACTCGGCGAATCGAGTCCCAGGGTCATGGAACGAGGC
                      ____________________________________________________________
consensus             TCCGGCGCCTTCAATCCTCTCGGACTCGGCGAATCGAGTCCCAGGGTCATGGAACGAGGC
 
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JMFS056G01+           GGATCGCTCCGTCTGACTCCTGTACATGGTCCGTCGGCAACACGGCGGCGTTAGGTTTTT
JMFS093A12+           GGATCGCGCCGACCGACTCCTGTACATGGTCCGGCGGCGACACGGCGGCGTTAGG-TTCT
JMFS071E10+           GGATCGCGCCGCCCGACTCCTGTACATGGTCCGGCGGCGACACGGCGGCGTTAGG-TTCT
                      ____________________________________________________________
consensus             GGATCGCGCCGTCCGACTCCTGTACATGGTCCGGCGGCGACACGGCGGCGTTAGG-TTCT
 
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JMFS056G01+           GGGAGCCTCTTTTGTTCTTTACTTTCCCGAATCTGTTTC                     
JMFS093A12+           GGTAGCTTCTTTTGTTCTTTACTTTCGCGAATCTGTTTCCTTGATTTCACGGAAATTGAA
JMFS071E10+           GGTAGCTTCTTTTGTTCTTTACTTTCGCGAATCTGTTTCCTTGATTTCACGGAAATTGAA
                      ____________________________________________________________
consensus             GGTAGCTTCTTTTGTTCTTTACTTTCGCGAATCTGTTTCCTTGATTTCACGGAAATTGAA
 
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JMFS093A12+           GAAGTACGGCTCGTAATGAGTTTCA                                   
JMFS071E10+           GAAGTCCGGCTCGTAATGAGTTTCACCGTACCCTGTTCCCTCTTCTTTCCGGAAGAGAGA
                      ____________________________________________________________
consensus             GAAGTCCGGCTCGTAATGAGTTTCACCGTACCCTGTTCCCTCTTCTTTCCGGAAGAGAGA