Contig 001933:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001G10Sequence524001933 (3)ref|XP_006365054.1|372PREDICTED: uncharacterized protein LOC102595305 [Solanum tuberosum]
JMFS038G05Sequence622001933 (3)ref|XP_009765250.1|2e-131PREDICTED: serine/threonine-protein kinase pakA-like [Nicotiana sylvestris] ref
JMFS070E11Sequence633001933 (3)ref|XP_009603644.1|432PREDICTED: uncharacterized protein LOC104098578 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS038G05+                                                             AAAGGCCATT
                      ____________________________________________________________
consensus                                                               AAAGGCCATT
 
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JMFS038G05+           ACTTGGATTGCTGGGTCTGAGCCAGGTGACCTTGTGGTCTACTAGGACAGGCTACTGACA
                      ____________________________________________________________
consensus             ACTTGGATTGCTGGGTCTGAGCCAGGTGACCTTGTGGTCTACTAGGACAGGCTACTGACA
 
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JMFS038G05+           TGGCACGTAAGCGTCTAGCAATTTCGGTGAAGGATGGCCGAGCTGCGGGGTCCGGAGCCC
JMFN001G10+                                                          GGGTCCGGAGCCC
                      ____________________________________________________________
consensus             TGGCACGTAAGCGTCTAGCAATTTCGGTGAAGGATGGCCGAGCTGCGGGGTCCGGAGCCC
 
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JMFS038G05+           AGCACTGTTCCATCAGCATTCTCCATTCAGGGTCACAGAAGTTTGGTATGTTTGGCCGTA
JMFN001G10+           AGCACTGTTCCATCAGCATTCTCCATTCAGGGTCACAGAAGTTTGGTATGTTTGGCCGTA
                      ____________________________________________________________
consensus             AGCACTGTTCCATCAGCATTCTCCATTCAGGGTCACAGAAGTTTGGTATGTTTGGCCGTA
 
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JMFS038G05+           AGGTGTTGTTCACAATGCCACCTATGATCGCTCCATAATGCATATTGGCATAAGGTTCTT
JMFN001G10+           AGGTGTTGTTCACAATGCCACCTATGATCGCTCCATAATGCATATTGGCATAAGGTTCTT
                      ____________________________________________________________
consensus             AGGTGTTGTTCACAATGCCACCTATGATCGCTCCATAATGCATATTGGCATAAGGTTCTT
 
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JMFS038G05+           CACCGGTAAGAATTTCCCAAAGTACAATCCCAAAGGAGAAGACATCAACCTTCTCAGAAA
JMFN001G10+           CACCGGTAAGAATTTCCCAAAGTACAATCCCAAAGGAGAAGACATCAACCTTCTCAGAAA
JMFS070E11+                                      TCCCAAAGGAGAAGACATCAACCTTCTCAGAAA
                      ____________________________________________________________
consensus             CACCGGTAAGAATTTCCCAAAGTACAATCCCAAAGGAGAAGACATCAACCTTCTCAGAAA
 
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JMFS038G05+           CTTTGTTGCTGCTCCCATTTAATAGCTCAGGAGCCATCCATGGAAGAGTTCCCCTTACAC
JMFN001G10+           CTTTGTTGCTGCTCCCATTTAATAGCTCAGGAGCCATCCATGGAAGAGTTCCCCTTACAC
JMFS070E11+           CTTTGTTGCTGCTCCCATTTAATAGCTCAGGAGCCATCCATGGAAGAGTTCCCCTTACAC
                      ____________________________________________________________
consensus             CTTTGTTGCTGCTCCCATTTAATAGCTCAGGAGCCATCCATGGAAGAGTTCCCCTTACAC
 
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JMFS038G05+           CACCAGTGACCAAGGTATTTCTCTTGATTTTGGACAGCCCAAAATCACCGACCTTGCAAA
JMFN001G10+           CACCAGTGACCAAGGTATTTCTCTTGATTTTGGACAGCCCAAAATCACCGACCTTGCAAA
JMFS070E11+           CACCAGTGACCAAGGTATTTCTCTTGATTTTGGACAGCCCAAAATCACCGACCTTGCAAA
                      ____________________________________________________________
consensus             CACCAGTGACCAAGGTATTTCTCTTGATTTTGGACAGCCCAAAATCACCGACCTTGCAAA
 
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JMFS038G05+           TTGGCCGAGAAGGATCCTTCAAGTTGACGAGCAAGTTGTCACATTTCAAGTCAAAATGCA
JMFN001G10+           TTGGCCGAGAAGGATCCTTCAAGTTGACGAGCAAGTTGTCACATTTCAAGTCAAAATGCA
JMFS070E11+           TTGGCCGAGAAGGATCCTTCAAGTTGACGAGCAAGTTGTCACATTTCAAGTCAAAATGCA
                      ____________________________________________________________
consensus             TTGGCCGAGAAGGATCCTTCAAGTTGACGAGCAAGTTGTCACATTTCAAGTCAAAATGCA
 
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JMFS038G05+           CAATATTTTTTGAATGCAAATATTCCATTCCAAATGCTGCATCTGTTGCGATGATGAGTT
JMFN001G10+           CAATATTTTTTGAATGCAAATATTCCATTCCAAATGCTGCATCTGTTGCGATGATGAGTT
JMFS070E11+           CAATATTTTTTGAATGCAAATATTCCATTCCAAATGCTGCATCTGTTGCGATGATGAGTT
                      ____________________________________________________________
consensus             CAATATTTTTTGAATGCAAATATTCCATTCCAAATGCTGCATCTGTTGCGATGATGAGTT
 
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JMFS038G05+           TCTTGCGACGATCAAGGTGTCTGTCCTTGCAAAGCAAAACATGTCTGAGGGACCCATTCA
JMFN001G10+           TCTTGCGACGATCAAGGTGTCTGTCCTTGCAAAGCAAAACATGTCTGAGGGACCCATTCA
JMFS070E11+           TCTTGCGACGATCAAGGTGTCTGTCCTTGCAAAGCAAAACATGTCTGAGGGACCCATTCA
                      ____________________________________________________________
consensus             TCTTGCGACGATCAAGGTGTCTGTCCTTGCAAAGCAAAACATGTCTGAGGGACCCATTCA
 
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JMFS038G05+           CCATGAACTCTG                                                
JMFN001G10+           CCATGAACTCTGTGACGGTAGCAAGAGTTGC                             
JMFS070E11+           CCATGAACTCTGTGACGGTAGCAAGAGTTGCTCCAGGCCCATCTTGCACCACACCATAAA
                      ____________________________________________________________
consensus             CCATGAACTCTGTGACGGTAGCAAGAGTTGCTCCAGGCCCATCTTGCACCACACCATAAA
 
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JMFS070E11+           ATGCCACCACATTTGGATGGTGAAGCTTTGAGAGAATATCAGCCTCACGCCAAAACTCAA
                      ____________________________________________________________
consensus             ATGCCACCACATTTGGATGGTGAAGCTTTGAGAGAATATCAGCCTCACGCCAAAACTCAA
 
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JMFS070E11+           CAGTCAGCCTCTCCTGCTCTGATGATCGGCCAGTGAAGCAACTTTTCTTTATTCTCTTGA
                      ____________________________________________________________
consensus             CAGTCAGCCTCTCCTGCTCTGATGATCGGCCAGTGAAGCAACTTTTCTTTATTCTCTTGA
 
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JMFS070E11+           TGGCAACATCTGTTCCTCTCCATTTGCCATGATAGACAGTGCCAAATGTTCCAGAACCCA
                      ____________________________________________________________
consensus             TGGCAACATCTGTTCCTCTCCATTTGCCATGATAGACAGTGCCAAATGTTCCAGAACCCA
 
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JMFS070E11+           ATTCCTTCAACTCTTCAAGGTCTTCATTTTTTATGATCTGCAAGGAGTGTATATCAAAAC
                      ____________________________________________________________
consensus             ATTCCTTCAACTCTTCAAGGTCTTCATTTTTTATGATCTGCAAGGAGTGTATATCAAAAC