Contig 001926:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012D16Sequence620001926 (2)ref|XP_006472002.1|1e-100PREDICTED: DNA excision repair protein ERCC-1-like isoform X2 [Citrus sinensis]
JMFS056C07Sequence642001926 (2)ref|XP_009604801.1|2e-71PREDICTED: DNA excision repair protein ERCC-1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN012D16+ TACCAACTTTATGAGAATATTTGGCGAAAGCAGCTGAAAGTGCTGACTTGATTG
                      ____________________________________________________________
consensus TACCAACTTTATGAGAATATTTGGCGAAAGCAGCTGAAAGTGCTGACTTGATTG
 
. : . : . : . : . : . :
JMFN012D16+ TTATGTCGGGTTCATTCTTTCTGCGCTTGTTTGGATCTTTGACTGCTGTCTCGATCTCTT
                      ____________________________________________________________
consensus TTATGTCGGGTTCATTCTTTCTGCGCTTGTTTGGATCTTTGACTGCTGTCTCGATCTCTT
 
. : . : . : . : . : . :
JMFN012D16+ CGCTTTCAGGGGCAGGACTTGCCCCGGTATTTGCATTAGCAGCTGCTTCAGGAACGGCAT
                      ____________________________________________________________
consensus CGCTTTCAGGGGCAGGACTTGCCCCGGTATTTGCATTAGCAGCTGCTTCAGGAACGGCAT
 
. : . : . : . : . : . :
JMFN012D16+ GTTTAGACACTTCACGCTGGAAAGGTTCGTGGAAAGTGTCATACAGGCGTTTTACCTTGC
                      ____________________________________________________________
consensus GTTTAGACACTTCACGCTGGAAAGGTTCGTGGAAAGTGTCATACAGGCGTTTTACCTTGC
 
. : . : . : . : . : . :
JMFN012D16+ GCTCCCCTATGCCAGGGCAACGAGCGAGATCTTCCATGGATGCATCCATGATGTTAGAAA
                      ____________________________________________________________
consensus GCTCCCCTATGCCAGGGCAACGAGCGAGATCTTCCATGGATGCATCCATGATGTTAGAAA
 
. : . : . : . : . : . :
JMFN012D16+ GAGACCCAAATGTTGAGCCAAGGGTCACTACATCTGTCTTGTTAACATGCCGTATTGATG
                      ____________________________________________________________
consensus GAGACCCAAATGTTGAGCCAAGGGTCACTACATCTGTCTTGTTAACATGCCGTATTGATG
 
. : . : . : . : . : . :
JMFN012D16+ TGAGAGCATGATTCAGCCGAGATAGATAGTCTGTATCCATTTGGCCCTGAATTAAATCAG
                      ____________________________________________________________
consensus TGAGAGCATGATTCAGCCGAGATAGATAGTCTGTATCCATTTGGCCCTGAATTAAATCAG
 
. : . : . : . : . : . :
JMFN012D16+ CAGGCTTGTTTTCATAAACTTTTATTGTCTCCAAGTAGCGTGCACATTCTTCCAAGCTCC
                      ____________________________________________________________
consensus CAGGCTTGTTTTCATAAACTTTTATTGTCTCCAAGTAGCGTGCACATTCTTCCAAGCTCC
 
. : . : . : . : . : . :
JMFN012D16+ AAGCACATAATAGAGTGCAATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
JMFS056C07+ AATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
                      ____________________________________________________________
consensus AAGCACATAATAGAGTGCAATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
 
. : . : . : . : . : . :
JMFN012D16+ TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
JMFS056C07+ TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
                      ____________________________________________________________
consensus TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
 
. : . : . : . : . : . :
JMFN012D16+ ACTCTCTTATCCGAAAATACAAATAG
JMFS056C07+ ACTCTCTTATCCGAAAATACAAATAGTCTGGATGAAGAAGATGATATCGAAGACTCAAAT
                      ____________________________________________________________
consensus ACTCTCTTATCCGAAAATACAAATAGTCTGGATGAAGAAGATGATATCGAAGACTCAAAT
 
. : . : . : . : . : . :
JMFS056C07+ ATAGGGCACAAGCATTCTGCCCCAATAGGTAGTCAGAAACCACATCTGCAAAAACCCATC
                      ____________________________________________________________
consensus ATAGGGCACAAGCATTCTGCCCCAATAGGTAGTCAGAAACCACATCTGCAAAAACCCATC
 
. : . : . : . : . : . :
JMFS056C07+ TAACATTCCTTATATGTTTAAGCATAGGATTTCCCTTCTGTCTATGGCTTACAAGTATAG
                      ____________________________________________________________
consensus TAACATTCCTTATATGTTTAAGCATAGGATTTCCCTTCTGTCTATGGCTTACAAGTATAG
 
. : . : . : . : . : . :
JMFS056C07+ CATTTCGCGGCGGAGGAACAGCGGTGGAAGAAGATGATGGCCGCGTAGCCGACAAAGACG
                      ____________________________________________________________
consensus CATTTCGCGGCGGAGGAACAGCGGTGGAAGAAGATGATGGCCGCGTAGCCGACAAAGACG
 
. : . : . : . : . : . :
JMFS056C07+ GAGCTTCTGATTGGATAATCGGCCTTGGAGCGACGGTTTGCGACGCCGGAGGAGCGGAAG
                      ____________________________________________________________
consensus GAGCTTCTGATTGGATAATCGGCCTTGGAGCGACGGTTTGCGACGCCGGAGGAGCGGAAG
 
. : . : . : . : . : . :
JMFS056C07+ CGGAAGAGGAAGGCGGCGGCGGCGGCGGCTGAGAGTAGAACTCTGAGTCCTTGACGAAAT
                      ____________________________________________________________
consensus CGGAAGAGGAAGGCGGCGGCGGCGGCGGCTGAGAGTAGAACTCTGAGTCCTTGACGAAAT
 
. : . : . : . : . : . :
JMFS056C07+ TGAAGGCTTGAGAGAAGGAAGTCGTAGGGTTGAAGAGAGAAGACGGCACCGTTTTGGTCT
                      ____________________________________________________________
consensus TGAAGGCTTGAGAGAAGGAAGTCGTAGGGTTGAAGAGAGAAGACGGCACCGTTTTGGTCT
 
. : . : . : . : . : . :
JMFS056C07+ GAGAGGTCTCCATCACCTCCTGATACGAAGGGATGTTTATCACGAAGCTCTTCTTCTTCC
                      ____________________________________________________________
consensus GAGAGGTCTCCATCACCTCCTGATACGAAGGGATGTTTATCACGAAGCTCTTCTTCTTCC
 
. : . : . : . : . : . :
JMFS056C07+ CGGCGGCGTCCTCTCCGGCCGGTCGCTCTTCCCGCTCTGTGCTTTCCATTTTCAGTGATG
                      ____________________________________________________________
consensus CGGCGGCGTCCTCTCCGGCCGGTCGCTCTTCCCGCTCTGTGCTTTCCATTTTCAGTGATG