Contig 001926:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN012D16Sequence620001926 (2)ref|XP_006472002.1|1e-100PREDICTED: DNA excision repair protein ERCC-1-like isoform X2 [Citrus sinensis]
JMFS056C07Sequence642001926 (2)ref|XP_009604801.1|2e-71PREDICTED: DNA excision repair protein ERCC-1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+                 TACCAACTTTATGAGAATATTTGGCGAAAGCAGCTGAAAGTGCTGACTTGATTG
                      ____________________________________________________________
consensus                   TACCAACTTTATGAGAATATTTGGCGAAAGCAGCTGAAAGTGCTGACTTGATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           TTATGTCGGGTTCATTCTTTCTGCGCTTGTTTGGATCTTTGACTGCTGTCTCGATCTCTT
                      ____________________________________________________________
consensus             TTATGTCGGGTTCATTCTTTCTGCGCTTGTTTGGATCTTTGACTGCTGTCTCGATCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           CGCTTTCAGGGGCAGGACTTGCCCCGGTATTTGCATTAGCAGCTGCTTCAGGAACGGCAT
                      ____________________________________________________________
consensus             CGCTTTCAGGGGCAGGACTTGCCCCGGTATTTGCATTAGCAGCTGCTTCAGGAACGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           GTTTAGACACTTCACGCTGGAAAGGTTCGTGGAAAGTGTCATACAGGCGTTTTACCTTGC
                      ____________________________________________________________
consensus             GTTTAGACACTTCACGCTGGAAAGGTTCGTGGAAAGTGTCATACAGGCGTTTTACCTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           GCTCCCCTATGCCAGGGCAACGAGCGAGATCTTCCATGGATGCATCCATGATGTTAGAAA
                      ____________________________________________________________
consensus             GCTCCCCTATGCCAGGGCAACGAGCGAGATCTTCCATGGATGCATCCATGATGTTAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           GAGACCCAAATGTTGAGCCAAGGGTCACTACATCTGTCTTGTTAACATGCCGTATTGATG
                      ____________________________________________________________
consensus             GAGACCCAAATGTTGAGCCAAGGGTCACTACATCTGTCTTGTTAACATGCCGTATTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           TGAGAGCATGATTCAGCCGAGATAGATAGTCTGTATCCATTTGGCCCTGAATTAAATCAG
                      ____________________________________________________________
consensus             TGAGAGCATGATTCAGCCGAGATAGATAGTCTGTATCCATTTGGCCCTGAATTAAATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           CAGGCTTGTTTTCATAAACTTTTATTGTCTCCAAGTAGCGTGCACATTCTTCCAAGCTCC
                      ____________________________________________________________
consensus             CAGGCTTGTTTTCATAAACTTTTATTGTCTCCAAGTAGCGTGCACATTCTTCCAAGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           AAGCACATAATAGAGTGCAATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
JMFS056C07+                             AATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
                      ____________________________________________________________
consensus             AAGCACATAATAGAGTGCAATCATGAAGTAGAGCTGTCCTTGTAACTTCAAGTAAAGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
JMFS056C07+           TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
                      ____________________________________________________________
consensus             TAACAACATCTTCAACATCAACATGGCACAAAACAACACGTAGCCTAAAATTCTTCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN012D16+           ACTCTCTTATCCGAAAATACAAATAG                                  
JMFS056C07+           ACTCTCTTATCCGAAAATACAAATAGTCTGGATGAAGAAGATGATATCGAAGACTCAAAT
                      ____________________________________________________________
consensus             ACTCTCTTATCCGAAAATACAAATAGTCTGGATGAAGAAGATGATATCGAAGACTCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           ATAGGGCACAAGCATTCTGCCCCAATAGGTAGTCAGAAACCACATCTGCAAAAACCCATC
                      ____________________________________________________________
consensus             ATAGGGCACAAGCATTCTGCCCCAATAGGTAGTCAGAAACCACATCTGCAAAAACCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           TAACATTCCTTATATGTTTAAGCATAGGATTTCCCTTCTGTCTATGGCTTACAAGTATAG
                      ____________________________________________________________
consensus             TAACATTCCTTATATGTTTAAGCATAGGATTTCCCTTCTGTCTATGGCTTACAAGTATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           CATTTCGCGGCGGAGGAACAGCGGTGGAAGAAGATGATGGCCGCGTAGCCGACAAAGACG
                      ____________________________________________________________
consensus             CATTTCGCGGCGGAGGAACAGCGGTGGAAGAAGATGATGGCCGCGTAGCCGACAAAGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           GAGCTTCTGATTGGATAATCGGCCTTGGAGCGACGGTTTGCGACGCCGGAGGAGCGGAAG
                      ____________________________________________________________
consensus             GAGCTTCTGATTGGATAATCGGCCTTGGAGCGACGGTTTGCGACGCCGGAGGAGCGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           CGGAAGAGGAAGGCGGCGGCGGCGGCGGCTGAGAGTAGAACTCTGAGTCCTTGACGAAAT
                      ____________________________________________________________
consensus             CGGAAGAGGAAGGCGGCGGCGGCGGCGGCTGAGAGTAGAACTCTGAGTCCTTGACGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           TGAAGGCTTGAGAGAAGGAAGTCGTAGGGTTGAAGAGAGAAGACGGCACCGTTTTGGTCT
                      ____________________________________________________________
consensus             TGAAGGCTTGAGAGAAGGAAGTCGTAGGGTTGAAGAGAGAAGACGGCACCGTTTTGGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           GAGAGGTCTCCATCACCTCCTGATACGAAGGGATGTTTATCACGAAGCTCTTCTTCTTCC
                      ____________________________________________________________
consensus             GAGAGGTCTCCATCACCTCCTGATACGAAGGGATGTTTATCACGAAGCTCTTCTTCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS056C07+           CGGCGGCGTCCTCTCCGGCCGGTCGCTCTTCCCGCTCTGTGCTTTCCATTTTCAGTGATG
                      ____________________________________________________________
consensus             CGGCGGCGTCCTCTCCGGCCGGTCGCTCTTCCCGCTCTGTGCTTTCCATTTTCAGTGATG