Contig 001922:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS053D10Sequence603001922 (2)ref|XP_007013140.1|2e-31Uncharacterized protein isoform 1 [Theobroma cacao] ref|XP_007013141.1| Uncharac
JMFS054D04Sequence596001922 (2)ref|XP_007013140.1|2e-30Uncharacterized protein isoform 1 [Theobroma cacao] ref|XP_007013141.1| Uncharac

Alignment

This contig is upended


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JMFS053D10+                                                                    ATC
                      ____________________________________________________________
consensus                                                                      ATC
 
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JMFS053D10+           GAGAGCTCCTTTCATCAAGTCCTTAGCAACCTCCTTCGACTTCCCGTCTAACCCACCTCC
JMFS054D04+               GCTCCTTTCAACAAGTCCTTAGCAACCTCCTTCGACTTCCCGTCTAACCCACCTCC
                      ____________________________________________________________
consensus             GAGAGCTCCTTTCATCAAGTCCTTAGCAACCTCCTTCGACTTCCCGTCTAACCCACCTCC
 
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JMFS053D10+           CTTCGACCACGACTCAATCACTCGACTCAGCTTCTGAGCTCCTCTCGATACCTCCATGAG
JMFS054D04+           CTTCGACCACGACTCAATCACTCGACTCAGCTTCTGAGCTCCTCTCGATACCTCCATGAG
                      ____________________________________________________________
consensus             CTTCGACCACGACTCAATCACTCGACTCAGCTTCTGAGCTCCTCTCGATACCTCCATGAG
 
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JMFS053D10+           CTGGACAGAACACGAGGCGTTTAACTCATCTGCAGACCCTTGGCACACCCTCTTTTCGCG
JMFS054D04+           CTGGACAGAACACGAGGCGTTTAACTCATCTGCAGACCCTTGGCACACCCTTTCTTCGCG
                      ____________________________________________________________
consensus             CTGGACAGAACACGAGGCGTTTAACTCATCTGCAGACCCTTGGCACACCCTTTTTTCGCG
 
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JMFS053D10+           TTCTTTCTTCACACTCATACCTTCACGAACTCCTCGTTTTACAAGCTTATCATCATCCAC
JMFS054D04+           TTCTTTCTTCACACTCATACCTTCACGAACTCCTCGTTTTACAAGCTTATCATCATCCAC
                      ____________________________________________________________
consensus             TTCTTTCTTCACACTCATACCTTCACGAACTCCTCGTTTTACAAGCTTATCATCATCCAC
 
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JMFS053D10+           CATCTTCGGGAGCTCGGTCTTGGACCTCCTAATCCTATTGCATTCAACTACACCCCTAGG
JMFS054D04+           CATCTTCGGGAGCTCGGTCTTGGACCTCCTAATCCTATTGCATTCAACTACACCCCTAGG
                      ____________________________________________________________
consensus             CATCTTCGGGAGCTCGGTCTTGGACCTCCTAATCCTATTGCATTCAACTACACCCCTAGG
 
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JMFS053D10+           ATCATCACACGTCAGAAATGATCTGTATAACACAGATCTCGGCCTGTCTTGTGGCATATT
JMFS054D04+           ATCATCACACGTCAGAAATGATCTGTATAACACAGATCTCGGCCTGTCTTGTGGCATATT
                      ____________________________________________________________
consensus             ATCATCACACGTCAGAAATGATCTGTATAACACAGATCTCGGCCTGTCTTGTGGCATATT
 
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JMFS053D10+           CTGGACTATTTCTATCACACAAATTTCATAGAAACATTCAAAGGCTTATTCAAATTCTGC
JMFS054D04+           CTGTACTATTTCTATCACACAAATTTCATAGAAACATTCAAAGGCTTATTCAAATTCTGC
                      ____________________________________________________________
consensus             CTGTACTATTTCTATCACACAAATTTCATAGAAACATTCAAAGGCTTATTCAAATTCTGC
 
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JMFS053D10+           CCAGTGGATTCACCTCAACACATATATATATATCTCAGCCAAGCTGTCAAAAGCTTGATA
JMFS054D04+           CCAGTGGATTCACCTCAACACATATATATATATCTCAGCCAAGCTGTCAAAAGCTTGATA
                      ____________________________________________________________
consensus             CCAGTGGATTCACCTCAACACATATATATATATCTCAGCCAAGCTGTCAAAAGCTTGATA
 
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JMFS053D10+           TGATGATGTAGACACAAAACACAGCTCTTTTTCAATCTTCAGCTTTAAAATACTGACACA
JMFS054D04+           TGATGATGTAGACACAAAACACAGCTCTTTTTCAATCTTCAGCTTTAAAATACTGACACA
                      ____________________________________________________________
consensus             TGATGATGTAGACACAAAACACAGCTCTTTTTCAATCTTCAGCTTTAAAATACTGACACA
 
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JMFS053D10+           CTCTTTTTTGGCTCCTGATGGATAAAAACAGAATCTTTGATCAACCCAATTCTCCTCCTT
JMFS054D04+           CTCTTTTTTGGCTCCTGATGGATAAAAACAGAATCTTTGATCAACCCAATTCTCCTCCTT
                      ____________________________________________________________
consensus             CTCTTTTTTGGCTCCTGATGGATAAAAACAGAATCTTTGATCAACCCAATTCTCCTCCTT