Contig 001918:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN032B15Sequence623001918 (7)ref|XP_008445090.1|1e-125PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo]
JMFS047D10Sequence616001918 (7)ref|XP_008445090.1|5e-106PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo]
JMFS114C10Sequence553001918 (7)ref|XP_008445090.1|2e-102PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo]
JMSF005H05Sequence356001918 (7)ref|XP_004138765.1|9e-40PREDICTED: COP9 signalosome complex subunit 5a-like [Cucumis sativus] ref|XP_00519001918 (7)emb|CBI37693.3|1e-79unnamed protein product [Vitis vinifera]
JMSF014H08Sequence271001918 (7)ref|XP_008445090.1|2e-24PREDICTED: COP9 signalosome complex subunit 5b-like [Cucumis melo]770001918 (7)emb|CBI37693.3|4e-146unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF005H05-                                                  TCAATTCGTATATCAGCCAC
rJMSF014H08-                                                  TCAATTCGTATATCAGCCAC
                      ____________________________________________________________
consensus                                                     TCAATTCGTATATCAGCCAC
 
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rJMSF005H05-          AGCCAACAATCCCACAACTTCCAATTAACAAAAAAAGAGATCTACATGAGATGAGGATAA
rJMSF014H08-          AGCCAACAATCCCACAACTTCCAATTAACAAAAAAAGAGATCTACATGAGATGAGGATAA
                      ____________________________________________________________
consensus             AGCCAACAATCCCACAACTTCCAATTAACAAAAAAAGAGATCTACATGAGATGAGGATAA
 
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rJMSF005H05-          CAACTAATGTAATATTGAGTTCATGTTTCAACCATGGGCTCAGGTCCTGAGGACTCTGTC
rJMSF014H08-          CAACTAATGTAATATTGAGTTCATGTTTCAACCATGGGCTCAGGTCCTGAGGACTCTGTC
                      ____________________________________________________________
consensus             CAACTAATGTAATATTGAGTTCATGTTTCAACCATGGGCTCAGGTCCTGAGGACTCTGTC
 
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rJMSF005H05-          CGGGATCTGTTTGACTGACGAACTGTGTTGAAAAGGATGTCCTTGATAACCTGTGACATT
rJMSF014H08-          CGGGATCTGTTTGACTGACGAACTGTGTTGAAAAGGATGTCCTTGATAACCTGTGACATT
                      ____________________________________________________________
consensus             CGGGATCTGTTTGACTGACGAACTGTGTTGAAAAGGATGTCCTTGATAACCTGTGACATT
 
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rJMSF005H05-          AGTCCATGAACCTGCTCCACAGTTATCTTTGCACTATCACAAGTTATCTTAGCAAGTTGA
rJMSF014H08-          AGTCCATGAACCTGCTCCACAGTTATCTTTGCACTATCACAAGTTATCTTAGCAAGTTGA
                      ____________________________________________________________
consensus             AGTCCATGAACCTGCTCCACAGTTATCTTTGCACTATCACAAGTTATCTTAGCAAGTTGA
 
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rJMSF005H05-          GATTCCTCCTCTTTCTTCCTCTGAGCAGGAGCTATCAAGGGTCCAAACCTTGAATGAGAT
rJMSF014H08-          GATTCCTCCTCTTTCTTCCTCTGAGCAGGAGCTATCAAGGGTCCAAACCTTGAATGAGAT
                      ____________________________________________________________
consensus             GATTCCTCCTCTTTCTTCCTCTGAGCAGGAGCTATCAAGGGTCCAAACCTTGAATGAGAT
 
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rJMSF005H05-          AGTTGGTTCTCAGCTTGTTCTAGCTTTTCAGCAAGATCTGAAATCTGTCCTGCAACATAG
rJMSF014H08-          AGTTGGTTCTCAGCTTGTTCTAGCTTTTCAGCAAGATCTGAAATCTGTCCTGCAACATAG
                      ____________________________________________________________
consensus             AGTTGGTTCTCAGCTTGTTCTAGCTTTTCAGCAAGATCTGAAATCTGTCCTGCAACATAG
 
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rJMSF005H05-          TCTCCATTCCCAAGTAAAGGAGAAGAAGAAAGTGTGTTCACCCAATACTTATTCCATAAA
rJMSF014H08-          TCTCCATTCCCAAGTAAAGGAGAAGAAGAAAGTGTGTTCACCCAATACTTATTCCATAAA
                      ____________________________________________________________
consensus             TCTCCATTCCCAAGTAAAGGAGAAGAAGAAAGTGTGTTCACCCAATACTTATTCCATAAA
 
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rJMSF005H05-          AGATCCAAAAGATGAGAGTCCAGAGATGATTTGAAATATGTGATGTCCAAAGAATAATAC
rJMSF014H08-          AGATCCAAAAGATGAGAGTCCAGAGATGATTTGAAATATGTGATGTCCAAAGAATAATAC
                      ____________________________________________________________
consensus             AGATCCAAAAGATGAGAGTCCAGAGATGATTTGAAATATGTGATGTCCAAAGAATAATAC
 
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rJMSF005H05-          TGTTTGCAGTGCACTCCAA                                         
rJMSF014H08-          TGTTTGCAGTGCACTCCAAAATCTTCAATTTTGTTCAAAGGGATGGTCTGATACTCAGAG
                      ____________________________________________________________
consensus             TGTTTGCAGTGCACTCCAAAATCTTCAATTTTGTTCAAAGGGATGGTCTGATACTCAGAG
 
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rJMSF014H08-          ACTGGTTCATCTGGCGGCTTATATCCCTCTGGGTATGTTCTGAACGCACCAATCTCAACT
JMFN032B15+                                          GGTATGTTCTGAACGCACCAATCTCAACT
                      ____________________________________________________________
consensus             ACTGGTTCATCTGGCGGCTTATATCCCTCTGGGTATGTTCTGAACGCACCAATCTCAACT
 
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rJMSF014H08-          TTCCCAGCAGAAACAGTTCTTGTTGGATCAATAACTACGGCTAGAAAGGGCTCCTGAAAT
JMFN032B15+           TTCCCAGCAGAAACAGTTCTTGTTGGATCAATAACTACGGCTAGAAAGGGCTCCTGAAAT
JMFS047D10+                                                       AAAGGGCTCCTGAAAT
                      ____________________________________________________________
consensus             TTCCCAGCAGAAACAGTTCTTGTTGGATCAATAACTACGGCTAGAAAGGGCTCCTGAAAT
 
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rJMSF014H08-          TGCTGGTTTAGCATTTGTGTAGAACCATCAATACCAGAAAGCCAGCATCCATAGCCAGGA
JMFN032B15+           TGCTGGTTTAGCATTTGTGTAGAAACATCAATACCAGAAAGCCAGCATCCATAGCCAGGA
JMFS114C10+           TGCTGGTTTAGCATTTGTGTAGAAACATCAATACCAGAAAGCCAGCATCCATAGCCAGGA
JMFS047D10+           TGCTGGTTTAGCATTTGTGTAGAAACATCAATACCAGAAAGCCAGCATCCATAGCCAGGA
                      ____________________________________________________________
consensus             TGCTGGTTTAGCATTTGTGTAGAAACATCAATACCAGAAAGCCAGCATCCATAGCCAGGA
 
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rJMSF014H08-          TGGGAATGATACCATCCANCAACATTCTCC                              
JMFN032B15+           TGGGAATGATACCATCCAACAACATTCTCCAACCGACCAGCCTGTTTATTTGTTTGCGAA
JMFS114C10+           TGGGAATGATACCATCCAACAACATTCTCCAACCGACCAGCCTGTTTATTTGTTTGCGAA
JMFS047D10+           TGGGAATGATACCATCCAACAACATTCTCCAACCGACCAGCCTGTTTATTTGTTTGCGAA
                      ____________________________________________________________
consensus             TGGGAATGATACCATCCAACAACATTCTCCAACCGACCAGCCTGTTTATTTGTTTGCGAA
 
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JMFN032B15+           TAATCGACCATGTACTCATAAGCATCGGCCTGAGCATTAACCCTAGTCTCAGTGCCTTCG
JMFS114C10+           TAATCGACCATGTACTCATAAGCATCGGCCTGAGCATTAACCCTAGTCTCAGTGCCTTCG
JMFS047D10+           TAATCGACCATGTACTCATAAGCATCGGCCTGAGCATTAACCCTAGTCTCAGTGCCTTCG
                      ____________________________________________________________
consensus             TAATCGACCATGTACTCATAAGCATCGGCCTGAGCATTAACCCTAGTCTCAGTGCCTTCG
 
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JMFN032B15+           ACGGGAAGAGCGAAGGCATCCATGACAATGATGGCGTCGCCGTCGGTTTTCCCCTGCATA
JMFS114C10+           ACGGGAAGAGCGAAGGCATCCATGACAATGATGGCGTCGCCGTCGGTTTTCCCCTGCATA
JMSF005H05+                                                               CCTGCATA
JMFS047D10+           ACGGGAAGAGCGAAGGCATCCATGACAATGATGGCGTCGCCGTCGGTTTTCCCCTGCATA
                      ____________________________________________________________
consensus             ACGGGAAGAGCGAAGGCATCCATGACAATGATGGCGTCGCCGTCGGTTTTCCCCTGCATA
 
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JMFN032B15+           AGGCCCATAACCTCGATGGTGCCACCGGAGCGCGCATGGACAACCATCTTGAGAAGCGCG
JMFS114C10+           AGGCCCATAACCTCGATGGTGCCACCGGAGCGCGCATGGACAACCATCTTGAGAAGCGCG
JMSF014H08+                                                                AAGCGCG
JMSF005H05+           AGGCCCATAACCTCGATGGTGCCACCGGAGCGCGCATGGACAACCATCTTGAGAAGCGCG
JMFS047D10+           AGGCCCATAACCTCGATGGTGCCACCGGAGCGCGCATGGACAACCATCTTGAGAAGCGCG
                      ____________________________________________________________
consensus             AGGCCCATAACCTCGATGGTGCCACCGGAGCGCGCATGGACAACCATCTTGAGAAGCGCG
 
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JMFN032B15+           AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
JMFS114C10+           AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
JMSF014H08+           AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
JMSF005H05+           AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
JMFS047D10+           AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
                      ____________________________________________________________
consensus             AGTGCGGAGATCTTGACGCGCTTGAAGTAGTGCGGATCGTTGGTCCATGGCTTCTCCTGC
 
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JMFN032B15+           TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
JMFS114C10+           TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
JMSF014H08+           TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
JMSF005H05+           TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
JMFS047D10+           TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
                      ____________________________________________________________
consensus             TGGAACTTGGTCTGCGCCGTCTCATCGTAGTAAAATATGGCGTCCGACGATGCCGAGGCG
 
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JMFN032B15+           GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTCCATTGTCTCAACGTTGTTCTCTATCTCC
JMFS114C10+           GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTCCATTGTCTCAACGTTGTTCTCTATCTCC
JMSF014H08+           GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTCCATTGTCTCAACGTTGTTCTCTATCTCC
JMSF005H05+           GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTCCATTGTCTCAACGTTGTTCTCTATCTCC
JMFS047D10+           GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTACATTGTCTCAACGTTGTTCTCTATCTCC
                      ____________________________________________________________
consensus             GCGGCGGAGTCGGCCGACGTCGGCGGCAAGTCCATTGTCTCAACGTTGTTCTCTATCTCC
 
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JMFN032B15+           CAGGTCTTCTGGGCAATTGCCGCCGATGATG                             
JMFS114C10+           CAGGTCTTCTGGGCAATTGCCGCCGATGATGTGAAAGAATCCATTAGGTGTAAAGCTCTT
JMSF014H08+           CAGGTCTTCTGGGCAATTGCCGCCGATGATGTGAAAGAATCCATTAGGTGTAAAGCTCTT
JMSF005H05+           CAGGTCTTCTGGGCAATTGCCGCCGATGATGTGAAAGAATCCATTAGGTGTAAAGCTCTT
JMFS047D10+           CAGGTCTTCTGGGCAATTGCCGCCGATGATGTGAAAGAATCCATTAGGTGTAAAGCTCTT
                      ____________________________________________________________
consensus             CAGGTCTTCTGGGCAATTGCCGCCGATGATGTGAAAGAATCCATTAGGTGTAAAGCTCTT
 
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JMFS114C10+           GGAGAGGACACGC                                               
JMSF014H08+           GGAGAGGACACGCCACTATAACT                                     
JMSF005H05+           GGAGAGGACACGCCACTATAACTGAGCTCTTGTGCAGTGCCGCCTGT             
JMFS047D10+           GGAGAGGACACGCCACTATAACTGAGCTCTTGTGCAGTGCCGCCTGTAAATACATATATA
                      ____________________________________________________________
consensus             GGAGAGGACACGCCACTATAACTGAGCTCTTGTGCAGTGCCGCCTGTAAATACATATATA