Contig 001916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004M11Sequence598001916 (5)ref|XP_003614391.1|6e-51Tar1p [Medicago truncatula]
JMFN020N11Sequence587001916 (5)ref|XP_003614391.1|7e-48Tar1p [Medicago truncatula]
JMFN031G20Sequence483001916 (5)ref|XP_003614391.1|8e-36Tar1p [Medicago truncatula]
JMFN041C22Sequence608001916 (5)ref|XP_003614391.1|6e-54Tar1p [Medicago truncatula]
JMFS046C06Sequence659001916 (5)emb|CDW75723.1|5e-56UNKNOWN [Stylonychia lemnae]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN004M11+ GACAGGTTTCGACAAT
JMFN020N11+ AGGTTTCGACAAT
JMFN031G20+ AGGTTTCGACAAT
JMFN041C22+ AGGTTTTGACAAT
                      ____________________________________________________________
consensus GACAGGTTTCGACAAT
 
. : . : . : . : . : . :
JMFN004M11+ GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN020N11+ GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN031G20+ GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN041C22+ GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
                      ____________________________________________________________
consensus GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
 
. : . : . : . : . : . :
JMFN004M11+ AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN020N11+ AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN031G20+ AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN041C22+ AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFS046C06+ GACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
                      ____________________________________________________________
consensus AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
 
. : . : . : . : . : . :
JMFN004M11+ GAACACTTCACCGGATCATTCAATCGGTAGGAGCAACGGGCGGTGTGTACAAAGGGCAGG
JMFN020N11+ GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAAG
JMFN031G20+ GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
JMFN041C22+ GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
JMFS046C06+ GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
                      ____________________________________________________________
consensus GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
 
. : . : . : . : . : . :
JMFN004M11+ GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN020N11+ GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN031G20+ GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN041C22+ GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFS046C06+ GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
                      ____________________________________________________________
consensus GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
 
. : . : . : . : . : . :
JMFN004M11+ AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN020N11+ AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN031G20+ AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN041C22+ AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFS046C06+ AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
                      ____________________________________________________________
consensus AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
 
. : . : . : . : . : . :
JMFN004M11+ AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN020N11+ AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN031G20+ AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN041C22+ AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFS046C06+ AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
                      ____________________________________________________________
consensus AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
 
. : . : . : . : . : . :
JMFN004M11+ GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN020N11+ GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN031G20+ GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN041C22+ GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFS046C06+ GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
                      ____________________________________________________________
consensus GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
 
. : . : . : . : . : . :
JMFN004M11+ GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFN020N11+ GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFN031G20+ GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAG
JMFN041C22+ GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFS046C06+ GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
                      ____________________________________________________________
consensus GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
 
. : . : . : . : . : . :
JMFN004M11+ TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFN020N11+ TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFN041C22+ TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFS046C06+ TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
                      ____________________________________________________________
consensus TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
 
. : . : . : . : . : . :
JMFN004M11+ TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATG
JMFN020N11+ TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCC
JMFN041C22+ TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGG
JMFS046C06+ TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTT
                      ____________________________________________________________
consensus TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTT
 
. : . : . : . : . : . :
JMFS046C06+ CCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATT
                      ____________________________________________________________
consensus CCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATT
 
. : . : . : . : . : . :
JMFS046C06+ CCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACCCTCGTGCCTAA
                      ____________________________________________________________
consensus CCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACCCTCGTGCCTAA