Contig 001916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004M11Sequence598001916 (5)ref|XP_003614391.1|6e-51Tar1p [Medicago truncatula]
JMFN020N11Sequence587001916 (5)ref|XP_003614391.1|7e-48Tar1p [Medicago truncatula]
JMFN031G20Sequence483001916 (5)ref|XP_003614391.1|8e-36Tar1p [Medicago truncatula]
JMFN041C22Sequence608001916 (5)ref|XP_003614391.1|6e-54Tar1p [Medicago truncatula]
JMFS046C06Sequence659001916 (5)emb|CDW75723.1|5e-56UNKNOWN [Stylonychia lemnae]

Alignment

This contig is upended


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JMFN004M11+                                                       GACAGGTTTCGACAAT
JMFN020N11+                                                          AGGTTTCGACAAT
JMFN031G20+                                                          AGGTTTCGACAAT
JMFN041C22+                                                          AGGTTTTGACAAT
                      ____________________________________________________________
consensus                                                         GACAGGTTTCGACAAT
 
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JMFN004M11+           GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN020N11+           GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN031G20+           GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
JMFN041C22+           GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
                      ____________________________________________________________
consensus             GATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGAT
 
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JMFN004M11+           AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN020N11+           AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN031G20+           AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFN041C22+           AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
JMFS046C06+                      GACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
                      ____________________________________________________________
consensus             AAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCGCCCACGTCGCCGCGATCC
 
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JMFN004M11+           GAACACTTCACCGGATCATTCAATCGGTAGGAGCAACGGGCGGTGTGTACAAAGGGCAGG
JMFN020N11+           GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAAG
JMFN031G20+           GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
JMFN041C22+           GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
JMFS046C06+           GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
                      ____________________________________________________________
consensus             GAACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGG
 
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JMFN004M11+           GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN020N11+           GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN031G20+           GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFN041C22+           GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
JMFS046C06+           GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
                      ____________________________________________________________
consensus             GACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAAC
 
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JMFN004M11+           AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN020N11+           AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN031G20+           AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFN041C22+           AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
JMFS046C06+           AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
                      ____________________________________________________________
consensus             AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCC
 
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JMFN004M11+           AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN020N11+           AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN031G20+           AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFN041C22+           AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
JMFS046C06+           AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
                      ____________________________________________________________
consensus             AAGGCTATATGCTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG
 
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JMFN004M11+           GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN020N11+           GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN031G20+           GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFN041C22+           GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
JMFS046C06+           GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
                      ____________________________________________________________
consensus             GCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCTTGAAAGGCCGTAGTCCCTCTAA
 
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JMFN004M11+           GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFN020N11+           GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFN031G20+           GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAG           
JMFN041C22+           GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
JMFS046C06+           GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
                      ____________________________________________________________
consensus             GAAGCTGGCCGCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGT
 
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JMFN004M11+           TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFN020N11+           TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFN041C22+           TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
JMFS046C06+           TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
                      ____________________________________________________________
consensus             TAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA
 
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JMFN004M11+           TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATG                  
JMFN020N11+           TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCC                          
JMFN041C22+           TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGG       
JMFS046C06+           TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTT
                      ____________________________________________________________
consensus             TAGAATCTCGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTT
 
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JMFS046C06+           CCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATT
                      ____________________________________________________________
consensus             CCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATT
 
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JMFS046C06+           CCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACCCTCGTGCCTAA
                      ____________________________________________________________
consensus             CCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACCCTCGTGCCTAA