Contig 001908:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN031L04Sequence592001908 (3)gb|AHJ58868.1|1e-07NGATHA [Eschscholzia californica]
JMFS039D07Sequence639001908 (3)ref|XP_006343756.1|5e-08PREDICTED: B3 domain-containing transcription factor NGA1-like [Solanum tuberos
JMFS062E08Sequence627001908 (3)gb|AHJ58870.1|6e-06NGATHAb [Nicotiana benthamiana]

Alignment

This contig is upended


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JMFS062E08+                                  GGAGAGATAGATTAAATTANAGCATTTAAAGAGATGC
                      ____________________________________________________________
consensus                                    GGAGAGATAGATTAAATTANAGCATTTAAAGAGATGC
 
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JMFS062E08+           TAATTAAGGATGAAGAAGAAATGGGAAATTGAAGTGTATTGATCTATCTCACGATCTCTC
                      ____________________________________________________________
consensus             TAATTAAGGATGAAGAAGAAATGGGAAATTGAAGTGTATTGATCTATCTCACGATCTCTC
 
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JMFS062E08+           TCTCTTAGATGGTGAGTAGTAGTATTATAACGACGATTTTATACACGAAGAAGTTTATGT
JMFN031L04+                         AGTAGTAGTATTATAACGACGATTTTATACACGAAGAAGTTTATGT
                      ____________________________________________________________
consensus             TCTCTTAGATGGTGAGTAGTAGTATTATAACGACGATTTTATACACGAAGAAGTTTATGT
 
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JMFS062E08+           TGAATAATAATGCTAGTAGAAATGTTGAGTTGAGGAGAGCTTGCTTTGTTTGTTTGTTTC
JMFN031L04+           TGAATAATAATGCTAGTAGAAATGTTGAGTTGAGGAGAGCTTGCTTTGTTTGTTTGTTTC
                      ____________________________________________________________
consensus             TGAATAATAATGCTAGTAGAAATGTTGAGTTGAGGAGAGCTTGCTTTGTTTGTTTGTTTC
 
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JMFS062E08+           TTTCTTTCTGCAATTCTGGGAATGGATGATCTGATCAGATATCGAAATCGAGGGACATGG
JMFN031L04+           TTTCTTTCTGCAATTCTGGGAATGGATGATCTGATCAGATATCGAAATCGAGGGACATGG
                      ____________________________________________________________
consensus             TTTCTTTCTGCAATTCTGGGAATGGATGATCTGATCAGATATCGAAATCGAGGGACATGG
 
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JMFS062E08+           AGGAGGAGGAGGACTTGTTGGGCTTATCAGAAGCTGCTAATTCCAATAATTCTTGGGTGG
JMFN031L04+           AGGAGGAGGAGGACTTGTTGGGCTTATCAGAAGCTGCTAATTCCAATAATTCTTGGGTGG
                      ____________________________________________________________
consensus             AGGAGGAGGAGGACTTGTTGGGCTTATCAGAAGCTGCTAATTCCAATAATTCTTGGGTGG
 
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JMFS062E08+           TGTCGTAGCCGCAGGGCCTTAATTGAAGGGAAGTTGGGATTGTTGTCGGAGAAGCGGCGG
JMFN031L04+           TGTCGTAGCCGCAGGGCCTTAATTGAAGGGAAGTTGGGATTGTTGTCGGAGAAGCGGCGG
JMFS039D07+                                ATTGAAGGGAAGTTGGGATTGTTGTCGGANAAACGNCGG
                      ____________________________________________________________
consensus             TGTCGTAGCCGCAGGGCCTTAATTGAAGGGAAGTTGGGATTGTTGTCGGAGAAGCGGCGG
 
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JMFS062E08+           AGTTGGAGGCGGTGGCGGTGGCGGCGGAGGAGGAGGAAGACAAAATGTCGCAGTCATCCG
JMFN031L04+           AGTTGGAGGCGGTGGCGGTGGCGGCGGAGGAGGAGGAAGACAAAATGTCGCAGTCATCCG
JMFS039D07+           AGTTGNAGGCGGTGNCGGTGNCGGCGGAGNAGNAGNAANACANAATGTCGCAGTCATCCG
                      ____________________________________________________________
consensus             AGTTGGAGGCGGTGGCGGTGGCGGCGGAGGAGGAGGAAGACAAAATGTCGCAGTCATCCG
 
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JMFS062E08+           AGTCGGAAATGGGACAGTCCATGTTCACGCCAAATAGCCTCAGTCGCTTTGCAGCAGCTT
JMFN031L04+           AGTCGGAAATGGGACAGTCCATGTTCACGCCAAATAGCCTCAGTCGCTTTGCAGCAGCTT
JMFS039D07+           AGTCGNAAATGGGACAGTCCATGTTCACGCCAAATAGCCTCAGTCGCTTTGCAGCAGCTT
                      ____________________________________________________________
consensus             AGTCGGAAATGGGACAGTCCATGTTCACGCCAAATAGCCTCAGTCGCTTTGCAGCAGCTT
 
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JMFS062E08+           TGCCTTGGACCACCGGCACCGACTCGAACACCATTGCTCCTCCGCCTCTTCTTTGCATAA
JMFN031L04+           TGCCTTGGACCACCGGCACCGACTCGAACACCATTGCTCCTCCGCCTCTTCTTTGCATAA
JMFS039D07+           TGCCTTGGACCACCGGCACCGACTCGAACACCATTGCTCCTCCGCCTCTTCTTTGCATAA
                      ____________________________________________________________
consensus             TGCCTTGGACCACCGGCACCGACTCGAACACCATTGCTCCTCCGCCTCTTCTTTGCATAA
 
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JMFS062E08+           TTTCTTGCTGGTGGGCGGCGCTC                                     
JMFN031L04+           TTTCTTGCTGGTGGGCGGCGCTCATTGGTCGCAGATAAATCCCCGACGAACAAGGGTTTC
JMFS039D07+           TTTCTTGCTGGTGGGCGGCGCTCATTGGTCGCAGATAAATCCCCGACGAACAAGGGTTTC
                      ____________________________________________________________
consensus             TTTCTTGCTGGTGGGCGGCGCTCATTGGTCGCAGATAAATCCCCGACGAACAAGGGTTTC
 
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JMFN031L04+           CGTTTACCACCACCGCACTACCGCTGGCGCCTCCCCCGCCGCCGCCGTTAAAAATTACAG
JMFS039D07+           CGTTTACCACCACCGCACTACCGCTGGCGCCTCCCCCGCCGCCGCCGTTAAAAATTACAG
                      ____________________________________________________________
consensus             CGTTTACCACCACCGCACTACCGCTGGCGCCTCCCCCGCCGCCGCCGTTAAAAATTACAG
 
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JMFN031L04+           AATTGT                                                      
JMFS039D07+           AATTGTGATGAGTGCTCCCGAATCCGTAGGTGTAGCCGTATGGGGGCGGCGGCGGCGATA
                      ____________________________________________________________
consensus             AATTGTGATGAGTGCTCCCGAATCCGTAGGTGTAGCCGTATGGGGGCGGCGGCGGCGATA
 
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JMFS039D07+           ACACAGCCTGATGATGATGATGATGAGTGCTCCCGAATCCGTAGGTGTAGCCGTATGGGG
                      ____________________________________________________________
consensus             ACACAGCCTGATGATGATGATGATGAGTGCTCCCGAATCCGTAGGTGTAGCCGTATGGGG
 
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JMFS039D07+           GCGGCGGCGGCGATAACACAGCCTGATGATGATGATGATGATGATTCCATGGCGGCGCCG
                      ____________________________________________________________
consensus             GCGGCGGCGGCGATAACACAGCCTGATGATGATGATGATGATGATTCCATGGCGGCGCCG
 
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JMFS039D07+           CCGCGGAAGGGTAGTGTAGGATGGAGCGCTGGAAGGGCAAGTGGTGCGGGAGCGAGATGG
                      ____________________________________________________________
consensus             CCGCGGAAGGGTAGTGTAGGATGGAGCGCTGGAAGGGCAAGTGGTGCGGGAGCGAGATGG
 
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JMFS039D07+           CCGGAATGGGCGCGAGGTGATGGTGACGGTGGTGATGATCGGAGTGGGAATCCGGACGGC
                      ____________________________________________________________
consensus             CCGGAATGGGCGCGAGGTGATGGTGACGGTGGTGATGATCGGAGTGGGAATCCGGACGGC