Contig 001907:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025P23Sequence676001907 (4)ref|XP_006357777.1|1e-15PREDICTED: U-box domain-containing protein 4-like isoform X2 [Solanum tuberosum
JMFF049J04Sequence610001907 (4)ref|XP_004231992.1|3e-46PREDICTED: U-box domain-containing protein 2 isoform X2 [Solanum lycopersicum]608006104 (5)ref|XP_006482142.1|3e-72PREDICTED: U-box domain-containing protein 4-like [Citrus sinensis]
JMFS038D03Sequence608001907 (4)ref|XP_006357777.1|2e-16PREDICTED: U-box domain-containing protein 4-like isoform X2 [Solanum tuberosum
JMFS164G10Sequence631001907 (4)ref|XP_006357777.1|3e-16PREDICTED: U-box domain-containing protein 4-like isoform X2 [Solanum tuberosum

Alignment

This contig is upended


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JMFS164G10+                                  CTGAAAAAAAGCATGAAACTGTCAAAATAGTGTAACG
JMFF025P23+                   AAAACGATGCAGAAACTGAAAAAAAGCATGAAACTGTCAAAATAGTGTAACG
                      ____________________________________________________________
consensus                     AAAACGATGCAGAAACTGAAAAAAAGCATGAAACTGTCAAAATAGTGTAACG
 
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JMFS164G10+           AAGAAGAGGGGGCCTGAATTTATGAAGAAACTAATGGTACAATAGATTAATAACTAATAA
JMFF025P23+           AAGAAGAGGGGNCCTGAATTTATGAAGAAACTAATGGTACAATAGATTAATAACTAATAA
                      ____________________________________________________________
consensus             AAGAAGAGGGGGCCTGAATTTATGAAGAAACTAATGGTACAATAGATTAATAACTAATAA
 
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JMFS164G10+           GGTGCTAAAAAGGACAAATCTTTCATGGCAGAAAAAATGGGATTTTGAAAAAAAATTATA
JMFF025P23+           GGTGCTAAAAAGGACAAATCTTTCATGGCAGAAAAAATGGGATTTTGAAAAAAAATTATA
                      ____________________________________________________________
consensus             GGTGCTAAAAAGGACAAATCTTTCATGGCAGAAAAAATGGGATTTTGAAAAAAAATTATA
 
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JMFS164G10+           AAATAATTAAAGAGTGTCAGCAAAAGTTAAGCCCCACGACACTTACGTTTCGTCCTTAAC
JMFF049J04+                                                         GTTTCGTCCTTAAC
JMFF025P23+           AAATAATTAAAGAGTGTCAGCAAAAGTTAAGCCCCACGACACTTACGTTTCGTCCTTAAC
JMFS038D03+                                                         GTTTCGTCCTTAAC
                      ____________________________________________________________
consensus             AAATAATTAAAGAGTGTCAGCAAAAGTTAAGCCCCACGACACTTACGTTTCGTCCTTAAC
 
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JMFS164G10+           AGCGAGATTGAGAAGGGCGAGGAGCGCGGCCTCGTTAGATTCAACAGAGCCGGAGCGGAG
JMFF049J04+           AGCGAGATTGAGAAGGGCGAGGAGCGCGGCCTCGTTAGATTCAACAGAGCCGGAGCGGAG
JMFF025P23+           AGCGAGATTGAGAAGGGCGAGGAGCGCGGCCTCGTTAGATTCAACAGAGCCGGAGCGGAG
JMFS038D03+           AGCGAGATTGAGAAGGGCGAGGAGCGCGGCCTCGTTAGATTCAACAGAGCCGGAGCGGAG
                      ____________________________________________________________
consensus             AGCGAGATTGAGAAGGGCGAGGAGCGCGGCCTCGTTAGATTCAACAGAGCCGGAGCGGAG
 
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JMFS164G10+           CATATCGACGAGAGGGCCGACGGCGCCGGAGAAGTGGCGTCGGTAGCGCTGGGAAGTCTT
JMFF049J04+           CATATCGACGAGAGGGCCGACGGCGCCGGAGAAGTGGCGTCGGTAGCGCTGGGAAGTCTT
JMFF025P23+           CATATCGACGAGAGGGCCGACGGCGCCGGAGAAGTGGCGTCGGTAGCGCTGGGAAGTCTC
JMFS038D03+           CATATCGACGAGAGGGCCGACGGCGCCGGAGAAGTGGCGTCGGTAGCGCTGGGAAGTCTT
                      ____________________________________________________________
consensus             CATATCGACGAGAGGGCCGACGGCGCCGGAGAAGTGGCGTCGGTAGCGCTGGGAAGTCTT
 
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JMFS164G10+           GGTGAGGCGCCTGATCTCCATGGCGGCATGGATTTTATCCCCCGGGTCGTCGGAACAGAT
JMFF049J04+           GGTGAGGCGCCTGATCTCCATGGCGGCATGGATTTTATCCCCCGGGTCGTCGGAACAGAT
JMFF025P23+           GGTGAGGCGCCTGATCTCCATGGCGGCATGGATTTTATCCCCCGGGTCGTCGGAACAGAT
JMFS038D03+           GGTGAGGCGCCTGATCTCCATGGCGGCATGGATTTTATCCCCCGGGTCGTCGGAACAGAT
                      ____________________________________________________________
consensus             GGTGAGGCGCCTGATCTCCATGGCGGCATGGATTTTATCCCCCGGGTCGTCGGAACAGAT
 
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JMFS164G10+           GAGCTGAAGAACCTGATTCACTACCACGGACGACGAAGACGAAGACGACGGCGTCATCGT
JMFF049J04+           GAGCTGAAGAACCTGATTCACTACCACGGACGACGAAGACGAAGACGACGGCGTCATCGT
JMFF025P23+           GAGCTGAAGAACCTGATTCACTACCACGGACGACGAAGACGAAGACGACGGCGTCATCGT
JMFS038D03+           GAGCTGAAGAACCTGATTCACTACCACGGACGACGAAGACGAAGACGACGGCGTCATCGT
                      ____________________________________________________________
consensus             GAGCTGAAGAACCTGATTCACTACCACGGACGACGAAGACGAAGACGACGGCGTCATCGT
 
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JMFS164G10+           CCGCGGCGTATCCCCATCGGAACTCGTCCCGCCGGCGATTGCCGCACTACAAGTAACCAA
JMFF049J04+           CCGCGGCGTATCCCCATCGGAACTCGTCCCGCCGGCGATTGCCGCACTACAAGTAACCAA
JMFF025P23+           CCGCGGCGTATCCCCATCGGAACTCGTCCCGCCGGCGATTGCCGCACTACAAGTAACCAA
JMFS038D03+           CCGCGGCGTATCCCCATCGGAACTCGTCCCGCCGGCGATTGCCGCACTACAAGTAACCAA
                      ____________________________________________________________
consensus             CCGCGGCGTATCCCCATCGGAACTCGTCCCGCCGGCGATTGCCGCACTACAAGTAACCAA
 
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JMFS164G10+           CCGGGTCAGCCTCGCCCCTTCCGGGTCCATTCTTGGCGCTCGCCAAAAGGCGAAGATGTA
JMFF049J04+           CCGGGTCAGCCTCGCCCCTTCCGGGTCCATTCTTGGCGCTCGCCAAAAGGCGAAGATGTA
JMFF025P23+           CCGGGTCAGCCTCGCCCCTTCCGGGTCCATTCTTGGCGCTCGCCAAAAGGCGAAGATGTA
JMFS038D03+           CCGGGTCAGCCTCGCCCCTTCCGGGTCCATTCTTGGCGCTCGCCAAAAGGCGAAGATGTA
                      ____________________________________________________________
consensus             CCGGGTCAGCCTCGCCCCTTCCGGGTCCATTCTTGGCGCTCGCCAAAAGGCGAAGATGTA
 
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JMFS164G10+           TGATTGAGCAGCCCAAAAAAATCTCAGGAGAGAGAGAGAGAGAGAGAGAAAGAA      
JMFF049J04+           TGATTGAGCAGCCCAAAAAAATCTCAGGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAG
JMFF025P23+           TGATTGAGCAGCCCAAAAAAATCTCAGGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAG
JMFS038D03+           TGATTGAGCAGCCCAAAAAAATCTCAGGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAG
                      ____________________________________________________________
consensus             TGATTGAGCAGCCCAAAAAAATCTCAGGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAG
 
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JMFF049J04+           AAGTAGGGACT                                                 
JMFF025P23+           AAGTAGGGACTGGGTAATAATACT                                    
JMFS038D03+           AAGTAGGGACTGGGTAATAATACTAGAAAGGAGTACTTGTATAGTACAGAGTAAAATAAA
                      ____________________________________________________________
consensus             AAGTAGGGACTGGGTAATAATACTAGAAAGGAGTACTTGTATAGTACAGAGTAAAATAAA