Contig 001906:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF022L24-                                            ATTTTTTTAACGGACCCCTAGGCACT
                      ____________________________________________________________
consensus                                               ATTTTTTTAACGGACCCCTAGGCACT
 
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rJMFF022L24-          AGGTGCCCCAAACACCCAAGGAGCGCCTAACAATTTTTTCGACTATGATTATACATCATC
                      ____________________________________________________________
consensus             AGGTGCCCCAAACACCCAAGGAGCGCCTAACAATTTTTTCGACTATGATTATACATCATC
 
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rJMFF022L24-          TGAAAATCACCCATCTTGATATGGCATGTATTATATTCAGTTCTCTCTCCCAATGCTTAA
                      ____________________________________________________________
consensus             TGAAAATCACCCATCTTGATATGGCATGTATTATATTCAGTTCTCTCTCCCAATGCTTAA
 
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rJMFF022L24-          ACAGGAAGAAAGGGTTATACATTAAGCTCCTCCATGCAAGACACTCGGGAGCAGCTTAAA
rJMFF032M11-                                  AGCTCCTCCATGCAAGACACTCGGGAGCAGCTTAAA
                      ____________________________________________________________
consensus             ACAGGAAGAAAGGGTTATACATTAAGCTCCTCCATGCAAGACACTCGGGAGCAGCTTAAA
 
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rJMFF022L24-          CCAGTCATAAGCATCCAGTTTTGTTTATACATTCTAGTATT-GCATAGAGCTGAGTAAAA
rJMFF032M11-          CCAGTCATAAGCATCCAGTTTTGTTTATACATTCTAGTATTAGCATAGAGCTGAGTAAAA
                      ____________________________________________________________
consensus             CCAGTCATAAGCATCCAGTTTTGTTTATACATTCTAGTATTAGCATAGAGCTGAGTAAAA
 
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rJMFF022L24-          GCCATACTTTTCAGGCCCCACCTCCATAAAAGAAAAAAGCATTAAGCACAGGACAAGAAC
rJMFF032M11-          GCCATACTTTTCAGGCCCCACCTCCATAAAAGAAAAAAGCATTAAGCACAGGACAAGAAC
                      ____________________________________________________________
consensus             GCCATACTTTTCAGGCCCCACCTCCATAAAAGAAAAAAGCATTAAGCACAGGACAAGAAC
 
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rJMFF022L24-          TAGATTTTGCAGAATTGCAGTGATCTTGGCTCTTTTATTTTTAGTAAACAGAATTCAGGA
rJMFF032M11-          TAGATTTTGCAGAATTGCAGTGATCTTGGCTCTTTTATTTTTAGTAAACAGAATTCAGGA
                      ____________________________________________________________
consensus             TAGATTTTGCAGAATTGCAGTGATCTTGGCTCTTTTATTTTTAGTAAACAGAATTCAGGA
 
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rJMFF022L24-          ACCATCCATGTGTGGCAACAAACTTTTCTCTTGCTTCAGAAGAAAATGACTTGAATATGA
rJMFF032M11-          ACCATCCATGTGTGGCAACAAACTTTTCTCTTGCTTCAGAAGAAAATGACTTGAATATGA
                      ____________________________________________________________
consensus             ACCATCCATGTGTGGCAACAAACTTTTCTCTTGCTTCAGAAGAAAATGACTTGAATATGA
 
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rJMFF022L24-          TTACCTAAATGCAGAAAAAATGGGGCGGACTTGTTCAAATATCTCATCTTCTGTTCCGGT
rJMFF032M11-          TTACCTAAATGCAGAAAAAATGGGGCGGACTTGTTCAAATATCTCATCTTCTGTTCCGGT
                      ____________________________________________________________
consensus             TTACCTAAATGCAGAAAAAATGGGGCGGACTTGTTCAAATATCTCATCTTCTGTTCCGGT
 
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rJMFF022L24-          ACCGTCGATCTTGTAAAGCTTCCCTTTCTTAGCATAGTACTCAATTACAGGAAAACTCAC
rJMFF032M11-          ACCGTCGATCTTGTAAAGCTTCCCTTTCTTAGCATAGTACTCAATTACAGGAAAACTCAC
                      ____________________________________________________________
consensus             ACCGTCGATCTTGTAAAGCTTCCCTTTCTTAGCATAGTACTCAATTACAGGAAAACTCAC
 
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rJMFF022L24-          AGCTCTAAATGTTTTCAGGCGCGCCCTTACTGTTTCTTCATTGTCATCGAGTCGCCCCTC
rJMFF032M11-          AGCTCTAAATGTTTTCAGGCGCGCCCTTACTGTTTCTTCATTGTCATCGAGTCGCCCCTC
JMFF032M11+                                                     GTCATCGAGTCGCCCCTC
JMFS029D04+                                  CCCTTACTGTTTCTTCATGGTCATCGAGTCGCCCCTC
JMFS035D05+                                                       CATCGAGTCGCCCCTC
                      ____________________________________________________________
consensus             AGCTCTAAATGTTTTCAGGCGCGCCCTTACTGTTTCTTCATTGTCATCGAGTCGCCCCTC
 
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rJMFF022L24-          ATTACGGTTTAGTACTCGTTCGATCATCACTTCTTCAGGGCAGTCGAAAAAAAGCACAAA
rJMFF032M11-          ATTACGGTTTAGTACTCGTTCGATCATCACTTCTTCAGGGCAGTCGAAAAAAAGCACAAA
JMFF032M11+           ATTACGGTTTAGTACTCGTTCGATCATCACTTCTTCAGGGCAGTCGAAAAAAAGCACAAA
JMFS029D04+           ATTACGGTTTAGTACTCGTTCGATCATCACTTCTTCAGGGCAGTCGAAAAAAAGCACAAA
JMFS035D05+           ATTACGGTTTAGTACTCGTTCGATCATCACTTCTCNAGGGCAGTCGAAAAAAAGCACAAA
                      ____________________________________________________________
consensus             ATTACGGTTTAGTACTCGTTCGATCATCACTTCTTCAGGGCAGTCGAAAAAAAGCACAAA
 
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rJMFF022L24-          ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
rJMFF032M11-          ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
JMFF032M11+           ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
JMFS029D04+           ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
JMFS035D05+           ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
                      ____________________________________________________________
consensus             ATTTGGTTCAGCGCGAATAATTTTCTCATACGCTATTCGGTTCTCTTCACTCCTTGGGAA
 
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rJMFF022L24-          ACCATCAATGAGAA                                              
rJMFF032M11-          ACCATCAATGAGAAACCTATCATTTTCACCTGATTCAATAGCCTTTCGAAGCAACTTGAC
JMFF032M11+           ACCATCAATGAGAAACCTATCATTTTCACCTGATTCAATAGCCTTTCGAAGCAACTTGAC
JMFS029D04+           ACCATCAATGAGAAACCTATCATTTTCACCTGATTCAATAGCCTTTCGAAGCAACTTGAC
JMFS035D05+           ACCATCAATGAGAAACCTATCATTTTCACCTGATTCAATAGCCTTTCGAAGCAACTTGAC
                      ____________________________________________________________
consensus             ACCATCAATGAGAAACCTATCATTTTCACCTGATTCAATAGCCTTTCGAAGCAACTTGAC
 
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rJMFF032M11-          AGTCACTTCTGATGGAGCAATTGTCCCTTCCTTCATGATCTTCTCAATCATGTCACTATA
JMFF032M11+           AGTCACTTCTGATGGAGCAATTGTCCCTTCCTTCATGATCTTCTCAATCATGTCACTATA
JMFS029D04+           AGTCACTTCTGATGGAGCAATTGTCCCTTCCTTCATGATCTTCTCAATCATGTCACTATA
JMFS035D05+           AGTCACTTCTGATGGAGCAATTGTCCCTTCCTTCATGATCTTCTCAATCATGTCACTATA
                      ____________________________________________________________
consensus             AGTCACTTCTGATGGAGCAATTGTCCCTTCCTTCATGATCTTCTCAATCATGTCACTATA
 
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rJMFF032M11-          TTCACTATTAGAACCCATTTCTTTCCTCAACAGTTCTCCAGCACTGATGTGTGTGAATCC
JMFF032M11+           TTCACTATTAGAACCCATTTCTTTCCTCAACAGTTCTCCAGCACTGATGTGTGTGAATCC
JMFS029D04+           TTCACTATTAGAACCCATTTCTTTCCTCAACAGTTCTCCAGCACTGATGTGTGTGAATCC
JMFS035D05+           TTCACTATTAGAACCCATTTCTTTCCTCAACAGTTCTCCAGCACTGATGTGTGTGAATCC
                      ____________________________________________________________
consensus             TTCACTATTAGAACCCATTTCTTTCCTCAACAGTTCTCCAGCACTGATGTGTGTGAATCC
 
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rJMFF032M11-          ATANGTATCAACAATTCTCGTGCATTGAGTACCTTTTCCACT                  
JMFF032M11+           ATAGGTATCAACAATTCTCGTGCATTGAGTACCTTTTCCACTGCCAGGACCTCCCAGAAC
JMFS029D04+           ATAGGTATCAACAATTCTCGTGCATTGAGTACCTTTTCCACTGCCAGGACCTCCCAGAAC
JMFS035D05+           ATAGGTATCAACAATTCTCGTGCATTGAGTACCTTTTCCACTGCCAGGACCTCCCAGAAC
                      ____________________________________________________________
consensus             ATAGGTATCAACAATTCTCGTGCATTGAGTACCTTTTCCACTGCCAGGACCTCCCAGAAC
 
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JMFF032M11+           AAAAGCTATGGATGGGGTTGTTTTTCTGGAAGAGATTCCACCTTCTGCCTGATTATAAAT
JMFS029D04+           AAAAGCTATGGATGGGGTTGTTTTTCTGGAAGAGATTCCACCTTCTGCCTGATTATAAAT
JMFS035D05+           AAAAGCTATGGATGGGGTTGTTTTTCTGGAAGAGATTCCACCTTCTGCCTGATTATAAAT
                      ____________________________________________________________
consensus             AAAAGCTATGGATGGGGTTGTTTTTCTGGAAGAGATTCCACCTTCTGCCTGATTATAAAT
 
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JMFF032M11+           CTCTGTACAAAACCCTTGCCAAATTTTGAACCCATTAACTGCTGGAACCTGGAGAAGATG
JMFS029D04+           CTCTGTACAAAACCCTTGCCAAATTTTGAACCCATTAACTGCTGGAACCTGGAGAAGATG
JMFS035D05+           CTCTGTACAAAACCCTTGCCAAATTTTGAACCCATTAACTGCTGGAACCTGGAGAAGATG
                      ____________________________________________________________
consensus             CTCTGTACAAAACCCTTGCCAAATTTTGAACCCATTAACTGCTGGAACCTGGAGAAGATG
 
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JMFF032M11+           AGAAGGCTTAGACGATGAAGACGAAAATCGTGGAGAGAATGCAGTGAGCCGCCTCCAC  
JMFS029D04+           AGAAGGCTTAGACGATGAAGACGAAAATCGTGGAGAGAATGCAGTGAGCCGCCTCCACAT
JMFS035D05+           AGAAGGCTTAGACGATGAAGACGAAAATCGTGGAGAGAATGCAGTGAGCCGCCTCCACAT
                      ____________________________________________________________
consensus             AGAAGGCTTAGACGATGAAGACGAAAATCGTGGAGAGAATGCAGTGAGCCGCCTCCACAT
 
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JMFS029D04+           CTTTGATGATCATAGAGGTATGAACATATGAACAAACGCAAAGCTAGAATTGGATTTCAG
JMFS035D05+           CTTTGATGATCATAGAGGTATGAACATATGAACAAACGCAAAGCTAGAATTGGATTTCAG
                      ____________________________________________________________
consensus             CTTTGATGATCATAGAGGTATGAACATATGAACAAACGCAAAGCTAGAATTGGATTTCAG