Contig 001905:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+                                  TTTTATATCCATCATAGGCCAAAGAGATCCAAACGTC
JMFS034H05+                                                 AGGCCAAAGAGATCCAAACGTC
                      ____________________________________________________________
consensus                                    TTTTATATCCATCATAGGCCAAAGAGATCCAAACGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           TACTTACACCACAAAACTGTCAATGACAAACCAAAAAAAAAAAAAAACTTATCAATTATA
JMFS034H05+           TACTTACACCACAAAACTGTCAATGACAAACCAAAAAAAAAAAANAACTTATCAATTATA
                      ____________________________________________________________
consensus             TACTTACACCACAAAACTGTCAATGACAAACCAAAAAAAAAAAAAAACTTATCAATTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           ATGATACTCCATGGGTGTAAACAAAGGTTCAATACAATAGCTTCGCTGAGTTAATAAAAA
JMFS034H05+           ATGATACTCCATGGGTGTAAACAAAGGTTCAATACAATAGCTTCGCTGAGTTAATAAAAA
                      ____________________________________________________________
consensus             ATGATACTCCATGGGTGTAAACAAAGGTTCAATACAATAGCTTCGCTGAGTTAATAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           TAACATTAAAGATACAGAAGGGCCCCCACACCCTGGCATGATAGTGCATGTGAGCATGTG
JMFS034H05+           TAACATTAAAGATACAGAAGGGCCCCCACACCCTGGCATGATAGTGCATGTGAGCATGTG
                      ____________________________________________________________
consensus             TAACATTAAAGATACAGAAGGGCCCCCACACCCTGGCATGATAGTGCATGTGAGCATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           AAAGGAGGTAAATCACGGTAACTCCTTGGCTCAGCAGACAGGACAAATGCCGGCCCGCAC
JMFS034H05+           AAAGGAGGTAAATCACGGTAACTCCTTGGCTCAGCAGACAGGACAAATGCCGGCCCGCAC
                      ____________________________________________________________
consensus             AAAGGAGGTAAATCACGGTAACTCCTTGGCTCAGCAGACAGGACAAATGCCGGCCCGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           AAGGGATCTGTCCACTTTGGACATAATCCAAACACTGCCGCTTTTGATCCTTGGTCTCTT
JMFS034H05+           AAGGGATCTGTCCACTTTGGACATAATCCAAACACTGCCGCTTTTGATCCTTGGTCTCTT
                      ____________________________________________________________
consensus             AAGGGATCTGTCCACTTTGGACATAATCCAAACACTGCCGCTTTTGATCCTTGGTCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           TCTCCCCGATAGTATGAACCAGTGAGCTAAGCTCATACGAGCAGATTATATATAATCTGA
JMSF030M02+                                                                   CTGA
JMSF020I06+                                                                   CTGA
JMFS034H05+           TCTCCCCGATAGTATGAACCAGTGAGCTAAGCTCATACGAGCAGATTATATATAATCTGA
                      ____________________________________________________________
consensus             TCTCCCCGATAGTATGAACCAGTGAGCTAAGCTCATACGAGCAGATTATATATAATCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           ATTGCAAAAAGATGAGAAAACCCCAGTTGAGTATGAGTTCAGTTGAAGGGTTAGCTTTGG
JMSF030M02+           ATTGCAAAAAGATGAGAAAACCCCAGTTGAGTATGAGTTCAGTTGAAGGGTTAGCTTTGG
JMSF020I06+           ATTGCAAAAAGATGAGAAAACCCCAGTTGAGTATGAGTTCAGTTGAAGGGTTAGCTTTGG
JMFS034H05+           ATTGCAAAAAGATGAGAAAACCCCAGTTGAGTATGAGTTCAGTTGAAGGGTTAGCTTTGG
                      ____________________________________________________________
consensus             ATTGCAAAAAGATGAGAAAACCCCAGTTGAGTATGAGTTCAGTTGAAGGGTTAGCTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           CAGTTAAAGAAAAGGAAAAGGAATGCAGTTCCTAGGCTCTAGCTGACTGTAACTGCTGCA
JMSF030M02+           CAGTTAAAGAAAAGGAAAAGGAATGCAGTTCCTAGGCTCTAGC                 
JMSF020I06+           CAGTTAAAGAAAAGGAAAAGGAATGCAGTTCCTAGGCTCTAGC                 
JMFS034H05+           CAGTTAAAGAAAAGGAAAAGGAATGCAGTTCCTAGGCTCTAGCTGACTGTAACTGCTGCA
                      ____________________________________________________________
consensus             CAGTTAAAGAAAAGGAAAAGGAATGCAGTTCCTAGGCTCTAGCTGACTGTAACTGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           AGAACACCAGAAGAAGAAGAAGAAGAAAGAGATGAAAATTGACTGTCTGGTCTGGGGGGC
JMFS034H05+           AGAACACCAGAAGAAGAAGAAGAAGAAAGAGATGAAAATTGACTGTCTGGTCTGGGGGGC
                      ____________________________________________________________
consensus             AGAACACCAGAAGAAGAAGAAGAAGAAAGAGATGAAAATTGACTGTCTGGTCTGGGGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS039E03+           CTCAGATTCTGGACTACTAGGCGAATTTGGAGAAGGGGGTCAAACAAAAGCTAAAGCGAA
JMFS034H05+           CTCAGATTCTGGACTACTAGGCGAATTTGGAGAAGGGGGTCAAACAAAAGCTAAAGCGAA
                      ____________________________________________________________
consensus             CTCAGATTCTGGACTACTAGGCGAATTTGGAGAAGGGGGTCAAACAAAAGCTAAAGCGAA