Contig 001904:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030H08Sequence439001904 (2)
JMFS092F05Sequence614001904 (2)ref|XP_008347115.1|7e-123PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin ligase SUD1 [Malus domest

Alignment

This contig is upended


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JMFS092F05+                           ACCTTCATCTTCCCTGTCAGCATCCTGTCCCCCAAGTTCTCGTA
                      ____________________________________________________________
consensus                             ACCTTCATCTTCCCTGTCAGCATCCTGTCCCCCAAGTTCTCGTA
 
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JMFS092F05+           AATGTCTGAAGTAATCCCTCAGTGAAGTTGCTCCAAGAAAAATAAATACAATGCTTGCAG
                      ____________________________________________________________
consensus             AATGTCTGAAGTAATCCCTCAGTGAAGTTGCTCCAAGAAAAATAAATACAATGCTTGCAG
 
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JMFS092F05+           AGAGGAGGAACCCATGCAGGCAGTCAGTAAGAATAACTGTCGTAGATATATGACTTAAGA
                      ____________________________________________________________
consensus             AGAGGAGGAACCCATGCAGGCAGTCAGTAAGAATAACTGTCGTAGATATATGACTTAAGA
 
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JMFS092F05+           ATAGCCTCTGAGCTTCACCAAAACTTCTAACAAACGCCAAACGCCATATCCAGAATGTTA
                      ____________________________________________________________
consensus             ATAGCCTCTGAGCTTCACCAAAACTTCTAACAAACGCCAAACGCCATATCCAGAATGTTA
 
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JMFS092F05+           TGAAAGGGATGATTAGAAGCCAAACAGAAAGTACAAAGCTAAGGCGCATGAAAAATTGCA
                      ____________________________________________________________
consensus             TGAAAGGGATGATTAGAAGCCAAACAGAAAGTACAAAGCTAAGGCGCATGAAAAATTGCA
 
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JMFS092F05+           GGACATGGCATGCCTTCATAGCCATCCCAACAATAAATTCCTGAAAAGGAAGCCTGGCTG
                      ____________________________________________________________
consensus             GGACATGGCATGCCTTCATAGCCATCCCAACAATAAATTCCTGAAAAGGAAGCCTGGCTG
 
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JMFS092F05+           GAGCATTCTCAGCATAAACGGGAGAGAAAGAAAAGGCATGTTTGCATACCTCGCATTGGC
                      ____________________________________________________________
consensus             GAGCATTCTCAGCATAAACGGGAGAGAAAGAAAAGGCATGTTTGCATACCTCGCATTGGC
 
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JMFS092F05+           GAGCGTTGCTGTGATTGAGCCACTGAAGAAGGCAATCCTGGTGGACATATTTAATACTGC
                      ____________________________________________________________
consensus             GAGCGTTGCTGTGATTGAGCCACTGAAGAAGGCAATCCTGGTGGACATATTTAATACTGC
 
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JMFS092F05+           CGCTGCACGCACAGGGATACCGGAGAGGGTTATCGGCGTCACCGGGGTTTCGACAGATCC
JMFS030H08+                                                    CCGGGGTTTCGACAGATCC
                      ____________________________________________________________
consensus             CGCTGCACGCACAGGGATACCGGAGAGGGTTATCGGCGTCACCGGGGTTTCGACAGATCC
 
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JMFS092F05+           GGCAAACGTCCTCCTCCTCTTCGTC-GTCATCATACTTGAAAGCTGTACCAGTAGCGCCA
JMFS030H08+           GGCAAACGTCCTCCTCCTGTTGGTCGGTCATCATACTTGAAAGCTGTACCAGTAGCGCCA
                      ____________________________________________________________
consensus             GGCAAACGTCCTCCTCCTGTTGGTCGGTCATCATACTTGAAAGCTGTACCAGTAGCGCCA
 
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JMFS092F05+           CTATTTTTATTCGCCGCGTCCGGCAGCATCG                             
JMFS030H08+           CTATTTTTATTCGCCGCGTCCGGCAGCATCGTTAAGGTGGAGGAAGATGCGGAAGAAGCG
                      ____________________________________________________________
consensus             CTATTTTTATTCGCCGCGTCCGGCAGCATCGTTAAGGTGGAGGAAGATGCGGAAGAAGCG
 
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JMFS030H08+           GTACCGGTAGTCCCCTTGATTGCATCGACCGAGAAGGAAGATGAGGAGGAGGAAGCGGCG
                      ____________________________________________________________
consensus             GTACCGGTAGTCCCCTTGATTGCATCGACCGAGAAGGAAGATGAGGAGGAGGAAGCGGCG
 
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JMFS030H08+           GCGGTGGCAATCCCGCTTCCACCGTCGTTAGACGCTGGCGCCGCCGGTGCGATCTCCATA
                      ____________________________________________________________
consensus             GCGGTGGCAATCCCGCTTCCACCGTCGTTAGACGCTGGCGCCGCCGGTGCGATCTCCATA
 
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JMFS030H08+           AGGACCTGGTGAGATTTCTCTCCTAGGGTTTTTTGAGGATCGGAATTTTAATCCAATGGA
                      ____________________________________________________________
consensus             AGGACCTGGTGAGATTTCTCTCCTAGGGTTTTTTGAGGATCGGAATTTTAATCCAATGGA
 
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JMFS030H08+           AATGACAGATTGTCGCTGGGGAAAGAACAACGGTTTTCTGGGTGGAGGATAGATCGGGGA
                      ____________________________________________________________
consensus             AATGACAGATTGTCGCTGGGGAAAGAACAACGGTTTTCTGGGTGGAGGATAGATCGGGGA
 
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JMFS030H08+           ACCACGTCTCCGCGAGGAAGAGTACTTCTTTGTCCTCCGGGAGTCGGTCCCTCGGGCCGA
                      ____________________________________________________________
consensus             ACCACGTCTCCGCGAGGAAGAGTACTTCTTTGTCCTCCGGGAGTCGGTCCCTCGGGCCGA