Contig 001902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS029C08Sequence612001902 (2)ref|XP_009589857.1|2e-92PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Nicotiana tomentos
JMFS127D01Sequence626001902 (2)ref|XP_009589857.1|3e-73PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Nicotiana tomentos

Alignment

This contig is upended


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JMFS127D01+                                               GATGTTCCAAAAATTGAAGGCATA
                      ____________________________________________________________
consensus                                                 GATGTTCCAAAAATTGAAGGCATA
 
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JMFS127D01+           CAGAAGTGCATCAATGCCCAAAGTTCAGAAAGATTGTTCTGTATAGGTGTGCCAGTCATC
                      ____________________________________________________________
consensus             CAGAAGTGCATCAATGCCCAAAGTTCAGAAAGATTGTTCTGTATAGGTGTGCCAGTCATC
 
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JMFS127D01+           AGTAATTTTCTTGGCATCAAAAACTGCTCTTTGAGGACATTGTACAGGACACTGCTCGTA
JMFS029C08+                                                           ACACTGCTCGTA
                      ____________________________________________________________
consensus             AGTAATTTTCTTGGCATCAAAAACTGCTCTTTGAGGACATTGTACAGGACACTGCTCGTA
 
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JMFS127D01+           TTCTTCAATCTTTGTGCTTCATCAATTATTACATAATGCCATGGAACTTGGGAAAGAAAT
JMFS029C08+           TTCTTCAATCTTTGTGCTTCATCAATTATTACATAATGCCATGGAACTTGGGAAAGAAAT
                      ____________________________________________________________
consensus             TTCTTCAATCTTTGTGCTTCATCAATTATTACATAATGCCATGGAACTTGGGAAAGAAAT
 
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JMFS127D01+           TCTTGATCAATCAATGCAATCTCATAAGTTGTTAATAGAACATCAAATGGTAATGATGGC
JMFS029C08+           TCTTGATCAATCAATGCAATCTCATAAGTTGTTAATAGAACATCAAATGGTAATGATGGC
                      ____________________________________________________________
consensus             TCTTGATCAATCAATGCAATCTCATAAGTTGTTAATAGAACATCAAATGGTAATGATGGC
 
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JMFS127D01+           ATCTGTAAGACATCAGGCAGTGACTCCTTGGAAGCATGCTCATACATTTTCCTACGCAGA
JMFS029C08+           ATCTGTAAGACATCAGGCAGTGACTCCTTGGAAGCATGCTCATACATTTTCCTACGCAGA
                      ____________________________________________________________
consensus             ATCTGTAAGACATCAGGCAGTGACTCCTTGGAAGCATGCTCATACATTTTCCTACGCAGA
 
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JMFS127D01+           CTGCGGCGATGCTCTTTCTCCCCAACATAGTGGGTTACTTTCAGCTTTGGAGCAAAGTTA
JMFS029C08+           CTGCGGCGATGCTCTTTCTCCCCAACATAGTGGGTTACTTTCAGCTTTGGAGCAAAGTTA
                      ____________________________________________________________
consensus             CTGCGGCGATGCTCTTTCTCCCCAACATAGTGGGTTACTTTCAGCTTTGGAGCAAAGTTA
 
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JMFS127D01+           GCTAACTCACACTTCCAACCATCAGTCACACTAAGTGGGCATAGTATTA           
JMFS029C08+           GCTAACTCACACTTCCAACCATCAGTCACACTAAGTGGGCATAGTATTAAAAACGGCCCA
                      ____________________________________________________________
consensus             GCTAACTCACACTTCCAACCATCAGTCACACTAAGTGGGCATAGTATTAAAAACGGCCCA
 
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JMFS029C08+           TTAGACTTCTGTGAAACCTTTAAGTAGCTCAAGAGCGATATTGCTTGCAGTGTCTTTCCC
                      ____________________________________________________________
consensus             TTAGACTTCTGTGAAACCTTTAAGTAGCTCAAGAGCGATATTGCTTGCAGTGTCTTTCCC
 
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JMFS029C08+           AATCCCATCTCATCCCCGAGAATGACATTGACGCCGAGACGATATCTTCGGATGAGCCAT
                      ____________________________________________________________
consensus             AATCCCATCTCATCCCCGAGAATGACATTGACGCCGAGACGATATCTTCGGATGAGCCAT
 
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JMFS029C08+           GAGACTCCTTCAACTTGGTGCGGCTTGAGCGTCGCTTTGAGTCCCAAGTCGGCGGAGCTA
                      ____________________________________________________________
consensus             GAGACTCCTTCAACTTGGTGCGGCTTGAGCGTCGCTTTGAGTCCCAAGTCGGCGGAGCTA
 
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JMFS029C08+           AGCGGAGCGTCTACGGCGGTTGAGTCATCGCCGTGTATGTACTTCGCCGCCGCTATGAGT
                      ____________________________________________________________
consensus             AGCGGAGCGTCTACGGCGGTTGAGTCATCGCCGTGTATGTACTTCGCCGCCGCTATGAGT
 
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JMFS029C08+           CGCTGCTCGTAATTCATGCCGGCCGGTAGCTCTGAGTGGACTAGCCGGTTGAGACGCAAA
                      ____________________________________________________________
consensus             CGCTGCTCGTAATTCATGCCGGCCGGTAGCTCTGAGTGGACTAGCCGGTTGAGACGCAAA