Contig 001900:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS028C09Sequence629001900 (2)ref|XP_006365432.1|264PREDICTED: peroxisome biogenesis protein 1-like [Solanum tuberosum]
JMSF007J20Sequence319001900 (2)ref|XP_006365432.1|124PREDICTED: peroxisome biogenesis protein 1-like [Solanum tuberosum]782007033 (2)gb|KJB69965.1|3e-85hypothetical protein B456_011G051500 [Gossypium raimondii]

Alignment

This contig is upended


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JMFS028C09+                                          GTGATGGAAATCTCATCAGAAGCTATTGA
                      ____________________________________________________________
consensus                                            GTGATGGAAATCTCATCAGAAGCTATTGA
 
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JMFS028C09+           TGACTCTTCTTCAGAACTCAAATTTCTTTTCCGTCTCTTTGGGGCAATTGCAACTTCACT
                      ____________________________________________________________
consensus             TGACTCTTCTTCAGAACTCAAATTTCTTTTCCGTCTCTTTGGGGCAATTGCAACTTCACT
 
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JMFS028C09+           TCCTGGGACAAGTTGTACTACCGGTGTCTTTGGAGAGGTAGAGGAAACAAAAAATTTTAT
                      ____________________________________________________________
consensus             TCCTGGGACAAGTTGTACTACCGGTGTCTTTGGAGAGGTAGAGGAAACAAAAAATTTTAT
 
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JMFS028C09+           AACACTTTGCCCATGTAGCCACAAAGGGAATCTCATTCCTTCATAGACAATACTGAGCTG
                      ____________________________________________________________
consensus             AACACTTTGCCCATGTAGCCACAAAGGGAATCTCATTCCTTCATAGACAATACTGAGCTG
 
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JMFS028C09+           CTTTAGAATAGCTTGCTCTGCAAGCTCGGAATTAAGCTCCATAACCTCCCAATCATCCTC
                      ____________________________________________________________
consensus             CTTTAGAATAGCTTGCTCTGCAAGCTCGGAATTAAGCTCCATAACCTCCCAATCATCCTC
 
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JMSF007J20+                                           TCGGCAAATTGGAAACAACTCGAACTTC
JMFS028C09+           AGTGTCCGGCTCTATGGTAACCATACTCGCCTTCGGCAAATTGGAAACAACTCGAACTTC
                      ____________________________________________________________
consensus             AGTGTCCGGCTCTATGGTAACCATACTCGCCTTCGGCAAATTGGAAACAACTCGAACTTC
 
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JMSF007J20+           AACAACCGTCCCGTCCGACAACCCGATACACTCCGCATATTGCTGAGCAATCTGGATAGA
JMFS028C09+           AACAACCGTCCCGTCCGACAACCCGATACACTCCGCATATTGCTGAGCAATCTGGATAGA
                      ____________________________________________________________
consensus             AACAACCGTCCCGTCCGACAACCCGATACACTCCGCATATTGCTGAGCAATCTGGATAGA
 
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JMSF007J20+           GGAAGCTGAAGGAGGGGAAGAGGCTGAGCCCGACCAAGCGACGTGCCAGAGGTTGTTGTG
JMFS028C09+           GGAAGCTGAAGGAGGGGAAGAGGCTGAGCCCGACCAAGCGACGTGCCAGAGGTTGTTGTG
                      ____________________________________________________________
consensus             GGAAGCTGAAGGAGGGGAAGAGGCTGAGCCCGACCAAGCGACGTGCCAGAGGTTGTTGTG
 
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JMSF007J20+           GGAAGAGCGGAGCTGGAGAGCAAGAATCGGAGGAAGGTAGCCGGAGCCGGCGGTGGACGC
JMFS028C09+           GGAAGAGCGGAGCTGGAGAGCAAGAATCGGAGGAAGGTAGCCGGAGCCGGCGGTGGACGC
                      ____________________________________________________________
consensus             GGAAGAGCGGAGCTGGAGAGCAAGAATCGGAGGAAGGTAGCCGGAGCCGGCGGTGGACGC
 
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JMSF007J20+           TAAGGTATTTATAAAAGTAATCGGAAGCGAAACGAAGCAGCTCTCGATTCCGGCGGCTAC
JMFS028C09+           TAAGGTATTTATAAAAGTAATCGGAAGCGAAACGAAGCAGCTCTCGATTCCGGCGGCTAC
                      ____________________________________________________________
consensus             TAAGGTATTTATAAAAGTAATCGGAAGCGAAACGAAGCAGCTCTCGATTCCGGCGGCTAC
 
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JMSF007J20+           TCTCACGTCAAACTCCATTCCACTCTATCTTTGCAGTTGCTCGGCGGTA           
JMFS028C09+           TCTCACGTCAAACTCCATTCCACTCTATCTTTGCAGTTGCTCGGCGGTATGCTTGTATCA
                      ____________________________________________________________
consensus             TCTCACGTCAAACTCCATTCCACTCTATCTTTGCAGTTGCTCGGCGGTATGCTTGTATCA