Contig 001897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040N17Sequence565001897 (6)ref|XP_009596423.1|6e-50PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana 727004087 (5)gb|KDO80127.1|8e-26hypothetical protein CISIN_1g005066mg [Citrus sinensis]
JMFS005D09Sequence588001897 (6)ref|XP_009596423.1|5e-59PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana
JMFS023A02Sequence525001897 (6)ref|XP_009596423.1|3e-29PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana
JMSF008A20Sequence289001897 (6)763004087 (5)gb|ACY30441.1|1e-36FtsH protease [Nicotiana tabacum]
JMSF015C15Sequence492001897 (6)ref|XP_009596423.1|7e-30PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana 795017110gb|KDO80127.1|7e-57hypothetical protein CISIN_1g005066mg [Citrus sinensis]
JMSF046F03Sequence783001897 (6)ref|XP_009766871.1|3e-89PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Nicotiana 682004087 (5)gb|KDO80127.1|2e-27hypothetical protein CISIN_1g005066mg [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046F03+                 CGAGGAAAGCCAAGCCAAGAGCACGGAATGTACGCCACAACTGTTCCTTGAAAT
                      ____________________________________________________________
consensus                   CGAGGAAAGCCAAGCCAAGAGCACGGAATGTACGCCACAACTGTTCCTTGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046F03+           GGCCACCTTCAACAGCCACCATATGTATTGGAGCATTAGGAGTACCAAGAACACTCTCTT
                      ____________________________________________________________
consensus             GGCCACCTTCAACAGCCACCATATGTATTGGAGCATTAGGAGTACCAAGAACACTCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+                                                      ACTACCCAAACCTTCTT
JMSF046F03+           TTGTATTTTTGCCCGCATTCCTAAAAGCTGATAGAGCTCCCAAACTACCCAAACCTTCTT
                      ____________________________________________________________
consensus             TTGTATTTTTGCCCGCATTCCTAAAAGCTGATAGAGCTCCCAAACTACCCAAACCTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           CCTCCACATGAGNAGTAGCAGCACCAGAAATCCCTCTCTGCAATGTCCTCAGCAGCTCAC
JMFF040N17+                                                       GTCCTCAGCAGCTCAC
JMSF046F03+           CCTCCACATGAGGAGTAGCAGCACCAGAAATCCCTCTCTGCAATGTCCTCAGCAGCTCAC
                      ____________________________________________________________
consensus             CCTCCACATGAGGAGTAGCAGCACCAGAAATCCCTCTCTGCAATGTCCTCAGCAGCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           TTTCATCCAGCCTATCAACCTTGACCAGTGCCTTAACATACTCCGAAAGTGCTTGTGGGT
JMFF040N17+           TTTCATCCAGCCTATCAACCTTGACCAGTGCCTTAACATACTCCGAAAGTGCTTGTGGGT
JMSF046F03+           TTTCATCCAGCCTATCAACCTTGACCAGTGCCTTAACATACTCCGAAAGTGCTTGTGGGT
                      ____________________________________________________________
consensus             TTTCATCCAGCCTATCAACCTTGACCAGTGCCTTAACATACTCCGAAAGTGCTTGTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           TAGAATGTAATGATGGCTGACTTTCAAACAATCGTATGACTGCCTCAGGATCATGTCGAT
JMFF040N17+           TAGAATGTAATGATGGCTGACTTTCAAACAATCGTATGACTGCCTCAGGATCATGTCGAT
JMSF046F03+           TAGAATGTAATGATGGCTGACTTTCAAACAATCGTATGACTGCCTCAGGATCATGTCGAT
JMSF015C15+                   AATGATGGCTGACTTTCAANCAATCGTATGACTGCCTCAGGATCATGTCGAT
JMFS023A02+                          GCTGACTTTCAAACAATCGTATGACTGCCTCAGGATCATGTCGAT
                      ____________________________________________________________
consensus             TAGAATGTAATGATGGCTGACTTTCAAACAATCGTATGACTGCCTCAGGATCATGTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
JMFF040N17+           TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
JMSF046F03+           TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
JMSF015C15+           TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
JMFS023A02+           TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
                      ____________________________________________________________
consensus             TATAAAGTTCCTTGAGATATGCAGCTTCACTCACTTCCTCTGTTTCACGTACTCTTCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
JMFF040N17+           CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
JMSF046F03+           CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
JMSF015C15+           CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
JMFS023A02+           CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
                      ____________________________________________________________
consensus             CTAGACTGCCCACGTAATTTGATTTAAACCTTTGCTGAGCCCTTACAAGTCCAGGCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
JMFF040N17+           CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
JMSF046F03+           CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
JMSF015C15+           CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
JMSF008A20+                                      TCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
JMFS023A02+           CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
                      ____________________________________________________________
consensus             CTCCATCTCTTGAAATCTTTGGTGAAGTCCTATAAGTTCTAGTGAGCAAATATCCAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
JMFF040N17+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
JMSF046F03+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
JMSF015C15+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
JMSF008A20+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
JMFS023A02+           GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
                      ____________________________________________________________
consensus             GTCTCACTTGAGATTGCTGCTTTTCAACCTGAGTGAGAAGGCGCCTTAAAGCCATCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
JMFF040N17+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
JMSF046F03+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
JMSF015C15+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
JMSF008A20+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
JMFS023A02+           TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
                      ____________________________________________________________
consensus             TTTGTCAAGAGAGACCGATCTTTTCCTTCTTCACCCAAAACTCCTCCGTTTCGTTCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
JMFF040N17+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
JMSF046F03+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
JMSF015C15+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
JMSF008A20+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
JMFS023A02+           TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
                      ____________________________________________________________
consensus             TCTTCGGCTATCTGTTATATAAAGCTATTTATATCTTTTCAGATTCTTTTAGCTTTGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS005D09+           ATGATCGTGAATGGAGAAGAGAACGAAAGCG                             
JMFF040N17+           ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
JMSF046F03+           ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
JMSF015C15+           ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
JMSF008A20+           ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
JMFS023A02+           ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
                      ____________________________________________________________
consensus             ATGATCGTGAATGGAGAAGAGAACGAAAGCGAGGCAGAGAGAGAAACACAGAGGACTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040N17+           AAC                                                         
JMSF046F03+           AACTAC                                                      
JMSF015C15+           AACTACGAATTCGAC                                             
JMSF008A20+           AACTAC                                                      
JMFS023A02+           AACTACGAATTCGACGGATTTGTTTTCCAGGAAAAAAGATCAATAAATAATTTAATTAAA
                      ____________________________________________________________
consensus             AACTACGAATTCGACGGATTTGTTTTCCAGGAAAAAAGATCAATAAATAATTTAATTAAA