Contig 001895:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS018H09Sequence601001895 (3)ref|XP_004241008.1|7e-74PREDICTED: nuclear-pore anchor [Solanum lycopersicum]
JMFS071A09Sequence626001895 (3)ref|XP_004241008.1|1e-66PREDICTED: nuclear-pore anchor [Solanum lycopersicum]
JMFS093F01Sequence639001895 (3)ref|XP_009368626.1|7e-56PREDICTED: nuclear-pore anchor-like [Pyrus x bretschneideri]

Alignment

This contig is upended


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JMFS071A09+                        AGCGAAGCCAAAGCTTGAGATGTTCTTGTCAACTCTTGAATAGTTTC
                      ____________________________________________________________
consensus                          AGCGAAGCCAAAGCTTGAGATGTTCTTGTCAACTCTTGAATAGTTTC
 
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JMFS071A09+           TGACTGCAGAATTACCTGTCTTTCATAATTAGCTTGAGCAGCTCGCCACCTTTGGTGCTC
                      ____________________________________________________________
consensus             TGACTGCAGAATTACCTGTCTTTCATAATTAGCTTGAGCAGCTCGCCACCTTTGGTGCTC
 
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JMFS071A09+           TTTCTCCAAATCATCTTTCAATGAAGAAATTTGTATCTCCATGACTCCAATTTGGGACAT
                      ____________________________________________________________
consensus             TTTCTCCAAATCATCTTTCAATGAAGAAATTTGTATCTCCATGACTCCAATTTGGGACAT
 
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JMFS071A09+           CTTTAAACAACAATCTTCTTTAAGATGGGCAATTTCAGAAAAGGCAGCTGCAAGTTCCTC
JMFS093F01+                           TCTTTAAGATGGGCAATTTCAGAAAAGGCAGCTGCAAGTTCCTC
                      ____________________________________________________________
consensus             CTTTAAACAACAATCTTCTTTAAGATGGGCAATTTCAGAAAAGGCAGCTGCAAGTTCCTC
 
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JMFS071A09+           GTCTTTTCCAGCATTTGCAGAAGCAGCCTCCTTAGTCCTCAAGTCACATTCACCTTCAAG
JMFS093F01+           GTCTTTTCCAGCATNTGCAGAAGCAGCCTCCTTAGTCCTCAAGTCACATTCACCTTCAAG
                      ____________________________________________________________
consensus             GTCTTTTCCAGCATTTGCAGAAGCAGCCTCCTTAGTCCTCAAGTCACATTCACCTTCAAG
 
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JMFS071A09+           TTCCTTAGCCCGCTTTCTAAGCAATAAAATTTCCTCTTCAAGAGAATTCTTCATGTTATC
JMFS093F01+           TTCCTTAGCCCGCTTTCTAAGCAATAAAATTTCCTCTTCAAGAGAATTCTTCATGTTATC
                      ____________________________________________________________
consensus             TTCCTTAGCCCGCTTTCTAAGCAATAAAATTTCCTCTTCAAGAGAATTCTTCATGTTATC
 
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JMFS071A09+           AGCCTCAACTTTGAAGTTCTCATGAGAGAGTTCCATCTGTTTCAATGCCTCTTCATTTGC
JMFS093F01+           AGCCTCAACTTTGAAGTTCTCATGAGAGAGTTCCATCTGTTTCAATGCCTCTTCATTTGC
                      ____________________________________________________________
consensus             AGCCTCAACTTTGAAGTTCTCATGAGAGAGTTCCATCTGTTTCAATGCCTCTTCATTTGC
 
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JMFS071A09+           CTGAGCAATGCTTTTATACTGCAGCATATGATCCTTGCAAAACTTTACTTCTTCTCTCAA
JMFS093F01+           CTGAGCAATGCTTTTATACTGCAGCATATGATCCTTGCAAAACTTTACTTCTTCTCTCAA
                      ____________________________________________________________
consensus             CTGAGCAATGCTTTTATACTGCAGCATATGATCCTTGCAAAACTTTACTTCTTCTCTCAA
 
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JMFS071A09+           ATTTTTTATTTCCTCTTGGGCAGTACACAGGTCCGCAAAAATCTTCTTCTCACTAGAAGA
JMFS093F01+           ATTTTTTATTTCCTCTTGGGCAGTACACAGGTCCGCAAAAAT---CTTCTCACTAGAAGA
                      ____________________________________________________________
consensus             ATTTTTTATTTCCTCTTGGGCAGTACACAGGTCCGCAAAAATCTTCTTCTCACTAGAAGA
 
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JMFS071A09+           GGATGAAGGACCACTTCCACCATTTATGTCAGAGATCTTAGTATGTGAAGACTGCAATTT
JMFS093F01+           GGATGAAGGACCACTTCCACCATTTATGTCAGAGATCTTAGTATGTGAAGACTGCAATTT
                      ____________________________________________________________
consensus             GGATGAAGGACCACTTCCACCATTTATGTCAGAGATCTTAGTATGTGAAGACTGCAATTT
 
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JMFS071A09+           TTCTTCCAAATCAGCAGCCCGTGCCTCTGCAACAGCAGC                     
JMFS093F01+           TTCTTCCAAATCAGCAGCCCGTGCCTCTGCAACAGCAGCCCTAGACTCGACCATAGATAG
                      ____________________________________________________________
consensus             TTCTTCCAAATCAGCAGCCCGTGCCTCTGCAACAGCAGCCCTAGACTCGACCATAGATAG
 
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JMFS093F01+           GGAATGCAAGGTGTTTGCCAATTCCTTTCCCATTTCTTCAACTTGTCGCAGTGCACTCTT
JMFS018H09+                                                                      T
                      ____________________________________________________________
consensus             GGAATGCAAGGTGTTTGCCAATTCCTTTCCCATTTCTTCAACTTGTCGCAGTGCACTCTT
 
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JMFS093F01+           CAAATCATTTTCCCGCACAAGTGTAAGATTTCGGACATTATTACGCTCTTCTTGCAACTC
JMFS018H09+           CAAATCATTTTCCCGCACAAGTGTAAGATTTCGGACATTATTACGCTCTTCTTGCAACTC
                      ____________________________________________________________
consensus             CAAATCATTTTCCCGCACAAGTGTAAGATTTCGGACATTATTACGCTCTTCTTGCAACTC
 
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JMFS093F01+           TTTCTTAGCTTCAGCCCATTCTTTCTCAATGTG                           
JMFS018H09+           TTTCTTAGCTTCAGCCCATTCTTTCTCAATGTGCTTAATATATTCCTCTTGCTTTCTCCT
                      ____________________________________________________________
consensus             TTTCTTAGCTTCAGCCCATTCTTTCTCAATGTGCTTAATATATTCCTCTTGCTTTCTCCT
 
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JMFS018H09+           CTCAGCACCCCTAGCCTCCTCACGAACTTCCTCAGTGCTTTGAATAGTATCTAAACTGGC
                      ____________________________________________________________
consensus             CTCAGCACCCCTAGCCTCCTCACGAACTTCCTCAGTGCTTTGAATAGTATCTAAACTGGC
 
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JMFS018H09+           CTGCAAACGGTGAACCCTCTCAGATAAACTACGAACTTCATCCGACGCTCTCTTTTCTGA
                      ____________________________________________________________
consensus             CTGCAAACGGTGAACCCTCTCAGATAAACTACGAACTTCATCCGACGCTCTCTTTTCTGA
 
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JMFS018H09+           ACTAACCAAAATTTCCTTCTCGTGCTTAAGAATTGAAACCTCCATTTTTAACTTTCTTGA
                      ____________________________________________________________
consensus             ACTAACCAAAATTTCCTTCTCGTGCTTAAGAATTGAAACCTCCATTTTTAACTTTCTTGA
 
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JMFS018H09+           AAGCTCCTCAGCAGCAGTACATGACTCAGAGTTTTCACGCAGCTTCTTTTGGTAGTCAAC
                      ____________________________________________________________
consensus             AAGCTCCTCAGCAGCAGTACATGACTCAGAGTTTTCACGCAGCTTCTTTTGGTAGTCAAC
 
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JMFS018H09+           AATCAACTGTGAGAACTCCACATTTCTTGAAAGGACAGCATTGTGTTCCTCTCTCATGTG
                      ____________________________________________________________
consensus             AATCAACTGTGAGAACTCCACATTTCTTGAAAGGACAGCATTGTGTTCCTCTCTCATGTG
 
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JMFS018H09+           TTCAAATTCTTTCAGAAATCTATCAAGTTTCCCCTGTGCAAATTGTGCTTCCAAAGCTGA
                      ____________________________________________________________
consensus             TTCAAATTCTTTCAGAAATCTATCAAGTTTCCCCTGTGCAAATTGTGCTTCCAAAGCTGA
 
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JMFS018H09+           TTTGTCACGCTCTGATCGTAAAGATATGACTTCACTCCGTAATTTCACCAGTTCATCTTC
                      ____________________________________________________________
consensus             TTTGTCACGCTCTGATCGTAAAGATATGACTTCACTCCGTAATTTCACCAGTTCATCTTC
 
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JMFS018H09+           AATGCACTTAAGACGCTCTAGTTTATGCTCTTGTGCCTTCTGTGACACCCCCTGGGACGA
                      ____________________________________________________________
consensus             AATGCACTTAAGACGCTCTAGTTTATGCTCTTGTGCCTTCTGTGACACCCCCTGGGACGA