Contig 001894:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS018G08+                                                  CCATCACTATCTTCTTTTGCA
                      ____________________________________________________________
consensus                                                    CCATCACTATCTTCTTTTGCA
 
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JMFS018G08+           ACATTGCCTTGAGCCCAAACNCCACCCATAAAAATACCCATACACAGTGCTACTATAATT
                      ____________________________________________________________
consensus             ACATTGCCTTGAGCCCAAACNCCACCCATAAAAATACCCATACACAGTGCTACTATAATT
 
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JMFS018G08+           ATTATTACAAGATCAAACTTAATAATGCCAAAAACCCTCCCCATTTTCTGCATACCAAGA
                      ____________________________________________________________
consensus             ATTATTACAAGATCAAACTTAATAATGCCAAAAACCCTCCCCATTTTCTGCATACCAAGA
 
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JMFS018G08+           ATTCCCAGCAAATCTGGATTCTAGACAAATGAATAAAATAATAGAGTACCCTTTCTGATC
                      ____________________________________________________________
consensus             ATTCCCAGCAAATCTGGATTCTAGACAAATGAATAAAATAATAGAGTACCCTTTCTGATC
 
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JMSF005E08+                                                AAAAAAAAAAAAATGGAATTTTT
JMSF023J13+                       AAGGGNCCCTTTGNGGNACCCNAAAAAAAAAAAAAAAATGGAATTTTT
JMFS018G08+           TTCAATAACAATAAGTGCCCATTTGCAGAACCC---AAAAAAAAAAAAAATGGAATTTTT
                      ____________________________________________________________
consensus             TTCAATAACAATAAGTGCCCCTTTGCGGAACCCNAAAAAAAAAAAAAAAATGGAATTTTT
 
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JMSF005E08+           TTCAAGAAATAAAGGTACCAGTTTGCAGAATCAGAAGATTCNACCAAAAAGAAATAAAAT
JMSF023J13+           TTCAAGAAATAAAGGTACCAGTTTGCAGAATCAGAAGATTCAACCAAAAAGAAATAAAAT
JMFS018G08+           TTCAAGAAATAAAGGTACCAGTTTGCAGAATCAGAAGATTCAACCAAAAAGAAATAAAAT
                      ____________________________________________________________
consensus             TTCAAGAAATAAAGGTACCAGTTTGCAGAATCAGAAGATTCAACCAAAAAGAAATAAAAT
 
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JMSF005E08+           GAGCTCTCTCTCTCTGGGGTTTTTCAAGAACTACCCATTCGCAGAAGCGGCAAAATGCNG
JMSF023J13+           GAGCTCTCTCTCTCTGGGGTTTTTCAAGAACTACCCATTCGCAGAAGCGGCAAAATGCAG
JMFS018G08+           GAGCTCTCTCTCTCTGGGGTTTTTCAAGAACTACCCATTCGCAGAAGCGGCAAAATGCAG
                      ____________________________________________________________
consensus             GAGCTCTCTCTCTCTGGGGTTTTTCAAGAACTACCCATTCGCAGAAGCGGCAAAATGCAG
 
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JMSF005E08+           TATAATATTAACCCAGAAAGCAAAGCAAAGAGAAGAGAAGAGAAGAGCCTTTTGCACTAC
JMSF023J13+           TATAATATTAACCCAGAAAGCAAAGCAAAGAGAAGAGAAGAGAAGAGCCTTTTGCACTAC
JMFS018G08+           TATAATATTAACCCAGAAAGCAAAGCAAAGAGAAGAGAAGAGAAGAGCCTTTTGCACTAC
                      ____________________________________________________________
consensus             TATAATATTAACCCAGAAAGCAAAGCAAAGAGAAGAGAAGAGAAGAGCCTTTTGCACTAC
 
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JMSF005E08+           AACTGTAAAGCCAAAGCTCCCAAACAAACTAGCAAGCAC                     
JMSF023J13+           AACTGTAAAGCCAAAGCTCCCAAACAAACTAGCAAGCACC                    
JMFS018G08+           AACTGTAAAGCCAAAGCTCCCAAACAAACTAGCAAGCACACCATTAACTCTGGTCTGTGG
                      ____________________________________________________________
consensus             AACTGTAAAGCCAAAGCTCCCAAACAAACTAGCAAGCACCCCATTAACTCTGGTCTGTGG
 
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JMFS018G08+           GAGGGCACTAAAAATAAAGCAGAAGATAAAGAAAAGGAGAATCCGTGAAATGGCCCAACT
                      ____________________________________________________________
consensus             GAGGGCACTAAAAATAAAGCAGAAGATAAAGAAAAGGAGAATCCGTGAAATGGCCCAACT
 
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JMFS018G08+           TTTTTCTTGGGTGCTGCGCATATGAAGAAGAAGAAGCGTTAATTATCTAATGCGAGCAAG
                      ____________________________________________________________
consensus             TTTTTCTTGGGTGCTGCGCATATGAAGAAGAAGAAGCGTTAATTATCTAATGCGAGCAAG