Contig 001893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016E08Sequence605001893 (2)ref|XP_010540708.1|1e-75PREDICTED: AP-4 complex subunit epsilon [Tarenaya hassleriana]
JMFS144F09Sequence600001893 (2)gb|KDP28329.1|7e-108hypothetical protein JCGZ_14100 [Jatropha curcas]

Alignment

This contig is upended


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JMFS144F09+                                                      CATTACAGCTTTTTTCC
                      ____________________________________________________________
consensus                                                        CATTACAGCTTTTTTCC
 
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JMFS144F09+           TAACAGCCTCCTTGGCGTGTCCCAGCAGCTCCACCACTTGAGGCAACACAGCGGGGATTG
                      ____________________________________________________________
consensus             TAACAGCCTCCTTGGCGTGTCCCAGCAGCTCCACCACTTGAGGCAACACAGCGGGGATTG
 
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JMFS144F09+           TGTCCTCATTAATCAACTTACAAACAGCATTCAATGCCGAGCAAACGACCAAGTAATTAT
JMFS016E08+                                                                  ATTAT
                      ____________________________________________________________
consensus             TGTCCTCATTAATCAACTTACAAACAGCATTCAATGCCGAGCAAACGACCAAGTAATTAT
 
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JMFS144F09+           CCGACTTCAAGTCCTTCTGGATCGTGTTTACAATCAAGATAATCAAATCATGGTCCTCGT
JMFS016E08+           CCGACTTCAAGTCCTTCTGGATCGTGTTTACAATCAAGATAATCAAATCATGGTCCTCGT
                      ____________________________________________________________
consensus             CCGACTTCAAGTCCTTCTGGATCGTGTTTACAATCAAGATAATCAAATCATGGTCCTCGT
 
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JMFS144F09+           TCAGAAACAAGGTCACGGCAAGGTACCCGGTTCTCTTGTGCAGCAAAGTATCATCGTGCG
JMFS016E08+           TCAGAAACAAGGTCACGGCAAGGTACCCGGTTCTCTTGTGCAGCAAAGTATCATCGTGCG
                      ____________________________________________________________
consensus             TCAGAAACAAGGTCACGGCAAGGTACCCGGTTCTCTTGTGCAGCAAAGTATCATCGTGCG
 
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JMFS144F09+           TCATCTTAACGGCGTGAATGTAGCCGAACGAAGCGTCGTGGCCAAGCATCTCCACATACA
JMFS016E08+           TCATCTTAACGGCGTGAATGTAGCCGAACGAAGCGTCGTGGCCAAGCATCTCCACATACA
                      ____________________________________________________________
consensus             TCATCTTAACGGCGTGAATGTAGCCGAACGAAGCGTCGTGGCCAAGCATCTCCACATACA
 
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JMFS144F09+           CAAGCCGCATTATGAATTCCTTCATCTTCCGCTTCGGGATATCAGGCTCTACGATGCGGC
JMFS016E08+           CAAGCCGCATTATGAATTCCTTCATCTTCCGCTTCGGGATATCAGGCTCTACGATGCGGC
                      ____________________________________________________________
consensus             CAAGCCGCATTATGAATTCCTTCATCTTCCGCTTCGGGATATCAGGCTCTACGATGCGGC
 
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JMFS144F09+           GCTTCAGGGTCTCGATCTCATTGCGAACAATGCGGTCTTCTTCCGCCTTGGATCTGGCTT
JMFS016E08+           GCTTCAGGGTCTCGATCTCATTGCGAACAATGCGGTCTTCTTCCGCCTTGGATCTGGCTT
                      ____________________________________________________________
consensus             GCTTCAGGGTCTCGATCTCATTGCGAACAATGCGGTCTTCTTCCGCCTTGGATCTGGCTT
 
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JMFS144F09+           CGCCGATGGCCTTGATCAGGTCCAAGAACTCCTTCGACTGCCCGAACCCGCCTTGGGAGC
JMFS016E08+           CGCCGATGGCCTTGATCAGGTCCAAGAACTCGTTCGACTGCCCGAACCCGCCTTGGGAGC
                      ____________________________________________________________
consensus             CGCCGATGGCCTTGATCAGGTCCAAGAACTCGTTCGACTGCCCGAACCCGCCTTGGGAGC
 
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JMFS144F09+           CCATTGCGAGCTCCAGTCCGATTGTCTTCAACTGCTCCA                     
JMFS016E08+           CCATTGCGAGCTCCAGTCCGATTGTCTTCAACTGCTCCAXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             CCATTGCGAGCTCCAGTCCGATTGTCTTCAACTGCTCCANNNNNNNNNNNNNNNNNNNNN
 
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JMFS016E08+           XXCAGAACGAACAATGCCAAGTTTTATTCGGTAGAAATCATGAGATTTTACGTTCCTCGA
                      ____________________________________________________________
consensus             NNCAGAACGAACAATGCCAAGTTTTATTCGGTAGAAATCATGAGATTTTACGTTCCTCGA
 
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JMFS016E08+           TTCAGATCGAGGATTGAAACCGATAATAATTTTAGGTTTGAAGATTGGGGAATTTCTGGT
                      ____________________________________________________________
consensus             TTCAGATCGAGGATTGAAACCGATAATAATTTTAGGTTTGAAGATTGGGGAATTTCTGGT
 
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JMFS016E08+           GATATCTCTATTCTCTAATGCCAACTCTGCTGTAGATCGATGCCCGGGAAAGTGACACGT
                      ____________________________________________________________
consensus             GATATCTCTATTCTCTAATGCCAACTCTGCTGTAGATCGATGCCCGGGAAAGTGACACGT