Contig 001887:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS010D05Sequence605001887 (2)ref|XP_009804235.1|1e-102PREDICTED: uncharacterized protein LOC104249497 isoform X2 [Nicotiana sylvestri
JMFS010D09Sequence605001887 (2)ref|XP_009804234.1|9e-104PREDICTED: uncharacterized protein LOC104249497 isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


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JMFS010D09+                                                                  TTCCG
JMFS010D05+                                                                  TTCCG
                      ____________________________________________________________
consensus                                                                    TTCCG
 
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JMFS010D09+           CCTCATCTCCTTGTGGTATTGCCGGAAGACTGAATCATTAAACACATGGATCACCATTTT
JMFS010D05+           CCTCATCTCCTTGTGGTATGCCCGGAAGACTGAATCATTAAACACATGGATCACCATTNT
                      ____________________________________________________________
consensus             CCTCATCTCCTTGTGGTATTGCCGGAAGACTGAATCATTAAACACATGGATCACCATTTT
 
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JMFS010D09+           GAAGTGCAGATTGTCACTGGATACATCTTTAATTTTTTTAAAGTCATAGAAGCATTTAAA
JMFS010D05+           GAAGTGCAGATTGTCACTGGATACATCTTTAATTTTTTTAAAGTCATAGAAGCATTTAAA
                      ____________________________________________________________
consensus             GAAGTGCAGATTGTCACTGGATACATCTTTAATTTTTTTAAAGTCATAGAAGCATTTAAA
 
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JMFS010D09+           GGACGTACGATAGCGTCTTTCCCTCATTAGACGAATCATTTCCTGTAATTTTGCAGTTGA
JMFS010D05+           GGACGTACGATAGCGTCTTTCCCTCATTAGACGAATCATTTCCTGTAATTTTGCAGTTGA
                      ____________________________________________________________
consensus             GGACGTACGATAGCGTCTTTCCCTCATTAGACGAATCATTTCCTGTAATTTTGCAGTTGA
 
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JMFS010D09+           ATAATCAGCAGGATGTGCTTGTAAGAACTTTGAAATTACAGATCGGTCAGCAGTTCTCGA
JMFS010D05+           ATAATCAGCAGGATGTGCTTGTAAGAACTTTGAAATTACAGATCGGTCAGCAGTTCTCGA
                      ____________________________________________________________
consensus             ATAATCAGCAGGATGTGCTTGTAAGAACTTTGAAATTACAGATCGGTCAGCAGTTCTCGA
 
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JMFS010D09+           ATGTGAATTCGATGTTTCAGTCCCAAACCAATCAAGATGATTTGGACAAAATGCGGAACC
JMFS010D05+           ATGTGAATTCGATGTTTCAGTCCCAAACCAATCAAGATGATTTGGACAAAATGCGGAACC
                      ____________________________________________________________
consensus             ATGTGAATTCGATGTTTCAGTCCCAAACCAATCAAGATGATTTGGACAAAATGCGGAACC
 
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JMFS010D09+           AACACCATTGAGAAGTGCTTTTATTTGCTGCTTCTCATCTGACCTATTTGCAGCACAAAT
JMFS010D05+           AACACCATTGAGAAGTGCTTTTATTTGCTGCTTCTCATCTGACCTATTTGCAGCACAAAT
                      ____________________________________________________________
consensus             AACACCATTGAGAAGTGCTTTTATTTGCTGCTTCTCATCTGACCTATTTGCAGCACAAAT
 
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JMFS010D09+           TTCACGAAGGGTTGGTCCCAAGTCTAAGCCAGCCCCCTCTAATGGTGGCAGAGGAAAGTC
JMFS010D05+           TTCACGAAGGGTTGGTCCCAAGTCTAAGCCAGCCCCCTCTAATGGTGGCAGAGGAAAGTC
                      ____________________________________________________________
consensus             TTCACGAAGGGTTGGTCCCAAGTCTAAGCCAGCCCCCTCTAATGGTGGCAGAGGAAAGTC
 
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JMFS010D09+           CCTTAACACCTGCTCCAAATGTTCCAAGCTCTCACGCCTTACAACACGAGCCACAAGACC
JMFS010D05+           CCTTAACACCTGCTCCAAATGTTCCAAGCTCTCACGCCTTACAACACGAGCCACAAGACC
                      ____________________________________________________________
consensus             CCTTAACACCTGCTCCAAATGTTCCAAGCTCTCACGCCTTACAACACGAGCCACAAGACC
 
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JMFS010D09+           CTCCAAAATATCGCCTTGCACCTTTATATGGTCTTTTGATCCAGGGACAGATATATCAGC
JMFS010D05+           CTCCAAAATATCGCCTTGCACCTTTATATGGTCTTTTGATCCAGGGACAGATATATCAGC
                      ____________________________________________________________
consensus             CTCCAAAATATCGCCTTGCACCTTTATATGGTCTTTTGATCCAGGGACAGATATATCAGC
 
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JMFS010D09+           AACTTCATCCAGAGCCTTGCAGACAGAGGTTGCTGTTCCCTCCTCACGGAGGGCATCAAA
JMFS010D05+           AACTTCATCCAGAGCCTTGCAGACAGAGGTTGCTGTTCCCTCCTCACGGAGGGCATCAAA
                      ____________________________________________________________
consensus             AACTTCATCCAGAGCCTTGCAGACAGAGGTTGCTGTTCCCTCCTCACGGAGGGCATCAAA