Contig 001882:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008A03Sequence631001882 (2)ref|XP_009588900.1|340PREDICTED: uncharacterized protein LOC104086356 [Nicotiana tomentosiformis]
JMSF033J09Sequence651001882 (2)ref|XP_009588900.1|337PREDICTED: uncharacterized protein LOC104086356 [Nicotiana tomentosiformis]687011284 (2)emb|CDP19908.1|1e-91unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF033J09+                                                                  CGGAC
                      ____________________________________________________________
consensus                                                                    CGGAC
 
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JMSF033J09+           AGAATCAGCATGCCTGCATAAGTCATCTGCATCAATCATTATCATGTCTGCCCCTGCTTC
JMFS008A03+                                        CATCAATCATTATCATGTCTGCCCCTGCTTC
                      ____________________________________________________________
consensus             AGAATCAGCATGCCTGCATAAGTCATCTGCATCAATCATTATCATGTCTGCCCCTGCTTC
 
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JMSF033J09+           TAAGCATCTCTCTGCCCTCCTAACCAAGAGGTCCACATCTTCCACAAAGTCTGAACTTCG
JMFS008A03+           TAAGCATCTCTCTGCCCTCCTAACCAAGAGGTCCACATCTTCCACAAAGTCTGAACTTCG
                      ____________________________________________________________
consensus             TAAGCATCTCTCTGCCCTCCTAACCAAGAGGTCCACATCTTCCACAAAGTCTGAACTTCG
 
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JMSF033J09+           AGGCGCTGGAACAACATAAGCTCCAAAAGCTCTATTGCTGCTCAAGGGCACATCAGACTT
JMFS008A03+           AGGCGCTGGAACAACATAAGCTCCAAAAGCTCTATTGCTGCTCAAGGGCACATCAGACTT
                      ____________________________________________________________
consensus             AGGCGCTGGAACAACATAAGCTCCAAAAGCTCTATTGCTGCTCAAGGGCACATCAGACTT
 
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JMSF033J09+           GTTAAACTTGACTGAAAACTGAGGCTTAACTCGAAGACCATCACTCTTAATCAACCGCAC
JMFS008A03+           GTTAAACTTGACTGAAAACTGAGGCTTAACTCGAAGACCATCACTCTTAATCAACCGCAC
                      ____________________________________________________________
consensus             GTTAAACTTGACTGAAAACTGAGGCTTAACTCGAAGACCATCACTCTTAATCAACCGCAC
 
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JMSF033J09+           ATATCTTAAAAGAGTCTCCTCAGGAATATCTAATGATGTAACATCGAGTTCAATGGTATC
JMFS008A03+           ATATCTTAAAAGAGTCTCCTCAGGAATATCTAATGATGTAACATCGAGTTCAATGGTATC
                      ____________________________________________________________
consensus             ATATCTTAAAAGAGTCTCCTCAGGAATATCTAATGATGTAACATCGAGTTCAATGGTATC
 
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JMSF033J09+           AAACCCCAACTGCTTATATTCCTCGATGTATTCTTTAAGATGTGAAGGACCTTTGCGAAG
JMFS008A03+           AAACCCCAACTGCTTATATTCCTCGATGTATTCTTTAAGATGTGAAGGACCTTTGCGAAG
                      ____________________________________________________________
consensus             AAACCCCAACTGCTTATATTCCTCGATGTATTCTTTAAGATGTGAAGGACCTTTGCGAAG
 
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JMSF033J09+           CAAGTTTTCAGCACAATCACCACTGCTAACATATACATTGTGTTTATGTGCCATGTCAAT
JMFS008A03+           CAAGTTTTCAGCACAATCACCACTGCTAACATACACATTGTGTTTATGTGCCATGTCAAT
                      ____________________________________________________________
consensus             CAAGTTTTCAGCACAATCACCACTGCTAACATATACATTGTGTTTATGTGCCATGTCAAT
 
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JMSF033J09+           TACGTCTCTGATGTATGTCTTTGGCATCATACTGTGAGATCCTCCACTAAACTTCAGCCC
JMFS008A03+           TACGTCTCTGATGTATGTCTTTGGCATCATACTGTGAGATCCTCCACTAAACTTCAGCCC
                      ____________________________________________________________
consensus             TACGTCTCTGATGTATGTCTTTGGCATCATACTGTGAGATCCTCCACTAAACTTCAGCCC
 
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JMSF033J09+           ATCAACAAACTGCCCCATAGACTCAAAAATATCCTGGAGGAGGGGGCGGGAGAAGAGAGA
JMFS008A03+           ATCAACAAACTGCCCCATAGACTCAAAAATATCCTGGAGGAGGGGGCGGGAGAAGAGAGA
                      ____________________________________________________________
consensus             ATCAACAAACTGCCCCATAGACTCAAAAATATCCTGGAGGAGGGGGCGGGAGAAGAGAGA
 
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JMSF033J09+           GTAATGCGGAGACCTCATTTCGGTGACGCCATAACTCCTTGGCTTTTCCGGCCGATCTTC
JMFS008A03+           GTAATGCGGAGACCTCATTTCGGTGACGCCATAACTCCTTGGCTTTTCCGGCCGATCTTC
                      ____________________________________________________________
consensus             GTAATGCGGAGACCTCATTTCGGTGACGCCATAACTCCTTGGCTTTTCCGGCCGATCTTC
 
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JMSF033J09+           GTCGTCGTAGAAGCTTTTCCACCTGTACGCTGCCATCGCTCTCT                
JMFS008A03+           GTCGTCGTAGAAGCTTTTCCACCTGTACGCTGCCATCGCTCTCTGTCTCCGTTGGTCTCA
                      ____________________________________________________________
consensus             GTCGTCGTAGAAGCTTTTCCACCTGTACGCTGCCATCGCTCTCTGTCTCCGTTGGTCTCA