Contig 001881:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS012E10+                                                      TTCAAATACATCACCAT
                      ____________________________________________________________
consensus                                                        TTCAAATACATCACCAT
 
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JMFS012E10+           TGGGGTATATTTGGGATCCTAAACCGTGTTTGAGGTTCAGCTTCCAACGGCCTTTGTAGG
                      ____________________________________________________________
consensus             TGGGGTATATTTGGGATCCTAAACCGTGTTTGAGGTTCAGCTTCCAACGGCCTTTGTAGG
 
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JMFS012E10+           TCATTTTATTAGAAGTAGTATACGTCCCTGTACCATGCATATACCCACCTGAAAATTCAC
                      ____________________________________________________________
consensus             TCATTTTATTAGAAGTAGTATACGTCCCTGTACCATGCATATACCCACCTGAAAATTCAC
 
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JMFS012E10+           CCTCGTAAACAGCACCAGAAGGCCATCTAAGTGTCCCATAACCGTGCCTCATCCCATGTC
JMFS005D07+                                                         CCTCATCCCATGTC
                      ____________________________________________________________
consensus             CCTCGTAAACAGCACCAGAAGGCCATCTAAGTGTCCCATAACCGTGCCTCATCCCATGTC
 
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JMFS012E10+           TCCACTCACCCTCGTACCTACAACCATCAGCCCAGATATACTGGCCTGAGCCCTCGGGTA
JMFS005D07+           TCCACTCACCCTCGTACCTACAACCATCAGCCCAGATATACTGGCCTGAGCCCTCGGGTA
                      ____________________________________________________________
consensus             TCCACTCACCCTCGTACCTACAACCATCAGCCCAGATATACTGGCCTGAGCCCTCGGGTA
 
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JMFS012E10+           TATTGCCCAGCAGGGACCCAGAATAACATTCCCCATTTCGTAGCAAGAGCTCTCCAACTC
JMFS005D07+           TATTGCCCAGCAGGGACCCAGAATAACATTCCCCATTTCGTAGCAAGAGCTCTCCAACTC
                      ____________________________________________________________
consensus             TATTGCCCAGCAGGGACCCAGAATAACATTCCCCATTTCGTAGCAAGAGCTCTCCAACTC
 
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JMFS012E10+           TAAACCCACTGGAATCATCCGAAAGAGAAACTTCCCCATTTGTTAAGCTGTTGAAGTGAT
JMFS005D07+           TAAACCCACTGGAATCATCCGAAAGAGAAACTTCCCCATTTGTTAAGCTGTTGAAGTGAT
                      ____________________________________________________________
consensus             TAAACCCACTGGAATCATCCGAAAGAGAAACTTCCCCATTTGTTAAGCTGTTGAAGTGAT
 
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JMFS012E10+           TGTCATTAAGCAATAGAGCATCAACAGATTGCGTCCTATCTGACAGCGAAAACGCTCTTC
JMFS005D07+           TGTCATTAAGCAATAGAGCATCAACAGATTGCGTCCTATCTGACAGCGAAAACGCTCTTC
                      ____________________________________________________________
consensus             TGTCATTAAGCAATAGAGCATCAACAGATTGCGTCCTATCTGACAGCGAAAACGCTCTTC
 
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JMFS012E10+           CAACACGATCAGCAATGACCACAGGACCAGACATGCATAATGCCAAAAAGTCTCAAATTG
JMFS005D07+           CAACACGATCAGCAATGACCACAGGACCAGACATGCATAATGCCAAAAAGTCTCAAATTG
                      ____________________________________________________________
consensus             CAACACGATCAGCAATGACCACAGGACCAGACATGCATAATGCCAAAAAGTCTCAAATTG
 
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JMFS012E10+           TTGTGATGTATAGAAAGTGATTGAGATGCTCTCATAAGCAAAAGGTCACTTTCATTGTAA
JMFS005D07+           TTGTGATGTATAGAAAGTGATTGAGATGCTCTCATAAGCAAAAGGTCACTTTCATTGTAA
                      ____________________________________________________________
consensus             TTGTGATGTATAGAAAGTGATTGAGATGCTCTCATAAGCAAAAGGTCACTTTCATTGTAA
 
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JMFS012E10+           AATAGCAAAGAGACTTCCTTAACTTCCCCTTTTTGGCCTTAAATGA              
JMFS005D07+           AATAGCAAAGAGACTTCCTTAACTTCCCCTTTTTGGCCTTAAATGAXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             AATAGCAAAGAGACTTCCTTAACTTCCCCTTTTTGGCCTTAAATGANNNNNNNNNNNNNN
 
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JMFS005D07+           XXXXXXXXXXXXXXXXTCAAAAGTGGAGTTGAAGAAGAGGCGAGGGAACAACTTACGAGT
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNTCAAAAGTGGAGTTGAAGAAGAGGCGAGGGAACAACTTACGAGT