Contig 001880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005C08Sequence266001880 (4)ref|XP_008459897.1|1e-05PREDICTED: uncharacterized protein At2g33490 [Cucumis melo]
JMSF028C11Sequence633001880 (4)ref|XP_004231753.1|2e-73PREDICTED: uncharacterized protein At2g33490 isoform X2 [Solanum lycopersicum]725005705 (2)ref|XP_006338724.1|1e-14PREDICTED: uncharacterized protein At2g33490-like [Solanum tuberosum]
JMSF033O23Sequence712001880 (4)ref|XP_004231753.1|2e-102PREDICTED: uncharacterized protein At2g33490 isoform X2 [Solanum lycopersicum]608005705 (2)ref|XP_006338724.1|4e-29PREDICTED: uncharacterized protein At2g33490-like [Solanum tuberosum]
JMSF049G24Sequence666001880 (4)ref|XP_010315904.1|2e-48PREDICTED: uncharacterized protein At2g33490 isoform X1 [Solanum lycopersicum]727004042 (2)

Alignment

This contig is upended


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JMSF033O23+                                                 TGCATGATGACGGGCTGCTTGG
                      ____________________________________________________________
consensus                                                   TGCATGATGACGGGCTGCTTGG
 
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JMSF033O23+           GTTAAAAGACTGCGGCATTGCCCTTGTTTCAGAGATTCCACACGAAAGATGCAGAGTCTT
                      ____________________________________________________________
consensus             GTTAAAAGACTGCGGCATTGCCCTTGTTTCAGAGATTCCACACGAAAGATGCAGAGTCTT
 
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JMSF033O23+           GCCATTTCATCATATTCTTCACGAGCAGCCTGCAATTTCTGTGAAGTAAAATTCTCTCCC
JMSF049G24+                TTCATCATGTTCTTCACGAGTAGCCTGCAATTGCTGTGGAGTAAAATTCTCGCCC
                      ____________________________________________________________
consensus             GCCATTTCATCATGTTCTTCACGAGTAGCCTGCAATTTCTGTGGAGTAAAATTCTCTCCC
 
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JMSF033O23+           TTTCCACTTTTACCCC---TTGTTATCAGGTACTCATACACCTCCCTTTTCTCATCACAT
JMSF028C11+                                 TTATCAGGTACTCATACACCTCCCTTTTCTCATCACAT
JMSF049G24+           TTTCCACATTTTCCCCTGTTGCTTATCATGTACTCATACACCTCCCTTTTCTCATCACAT
                      ____________________________________________________________
consensus             TTTCCACTTTTTCCCCTGTTTGTTATCAGGTACTCATACACCTCCCTTTTCTCATCACAT
 
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JMSF033O23+           TGTAGTTTCATCTCCTCCACTTTCCGAAGCTCACTTAGAAGGGACTCTGATGGATTAGTG
JMSF028C11+           TGTAGTTTCATCTCCTCCACTTTCCGAAGCTCACTTAGAAGGGACTCTGATGGATTAGTG
JMSF049G24+           TGTAGTTTCATCTCCTCCACTTTCCGAAGCTCATTAAGAAGAGACTCTGATGGGTTTGTG
                      ____________________________________________________________
consensus             TGTAGTTTCATCTCCTCCACTTTCCGAAGCTCACTTAGAAGGGACTCTGATGGATTAGTG
 
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JMSF033O23+           ATGGTTAGTATAATATGTGAACGATAGCCATCAACAAGTTTCTGCAGTTCCAGCTGCGCT
JMSF028C11+           ATGGTTAGTATAATATGTGAACGATAGCCATCAACAAGTTTCTGCAGTTCCAGCTGCGCT
JMSF049G24+           ATGGTTACAATAACATGAGTACGATAGATATCAACAAGTTTCTGCAGTTCCAGCTGCACT
                      ____________________________________________________________
consensus             ATGGTTAGTATAATATGTGAACGATAGCCATCAACAAGTTTCTGCAGTTCCAGCTGCGCT
 
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JMSF033O23+           CTTCCAAGCACTGAGAATGCTCTACGACTTTCTAAATCACCATGTAATGCAATCTTCTCC
JMSF028C11+           CTTCCAAGCACTGAGAATGCTCTACGACTTTCTAAATCACCATGTAATGCAATCTTCTCC
JMSF049G24+           CTTCCAAGTGCTGAGAATGCTTTGCCACTTTCTCCATCACCATTCAGTGTAATTTTCTCC
                      ____________________________________________________________
consensus             CTTCCAAGCACTGAGAATGCTCTACGACTTTCTAAATCACCATGTAATGCAATCTTCTCC
 
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JMSF033O23+           AGTAGGCAGTTCCCCATTTCCATTAATGACTCAGAAAACTCATAGGCACTATTTGCTGCT
JMSF028C11+           AGTAGGCAGTTCCCCATTTCCATTAATGACTCAGAAAACTCATAGGCACTATTTGCTGCT
JMSF049G24+           AATAG--AGTTCCCCATTTCCATCAAGGACTCCGAAAATTCATATGCACTATTTGCTGCT
JMFS005C08+                                                                      T
                      ____________________________________________________________
consensus             AGTAGGCAGTTCCCCATTTCCATTAATGACTCAGAAAACTCATAGGCACTATTTGCTGCT
 
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JMSF033O23+           GCAGCTGCTGCAGAAAGTAAGCTATCATAGCAGTTCCTCATGTCTTTCATATCCTGGGAA
JMSF028C11+           GCAGCTGCTGCAGAAAGTAAGCTATCATAGCAGTTCCTCATGTCTTTCATATCCTGGGAA
JMSF049G24+           GCTGCTGCTGCAGAAAGTAAACTATCATAGCAGTTCCTCATGTCTTTCATATCCTGCGAA
JMFS005C08+           GCAGCTGCTGCAGAAAGTAAGCTATCATAGCAGTTCCTCATGTCTTTCATATGCTGGGAA
                      ____________________________________________________________
consensus             GCAGCTGCTGCAGAAAGTAAGCTATCATAGCAGTTCCTCATGTCTTTCATATCCTGGGAA
 
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JMSF033O23+           GCTTGGGCGAGGCC                                              
JMSF028C11+           GCTTGGGCGAGGCC                                              
JMSF049G24+           GCCTGCGCGAGGCC                                              
JMFS005C08+           GCTTGGGCGAGGCCATCAGAGTAAGACAGAATCTGAAGATCTTTTTTGTCCTTCAGATCG
                      ____________________________________________________________
consensus             GCTTGGGCGAGGCCATCAGAGTAAGACAGAATCTGAAGATCTTTTTTGTCCTTCAGATCG
 
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JMFS005C08+           TTCTTGTGCAATGAAGAATTTACTTCAGGCTTGCCCAAGGATGACTTCATTTCAATGAAT
                      ____________________________________________________________
consensus             TTCTTGTGCAATGAAGAATTTACTTCAGGCTTGCCCAAGGATGACTTCATTTCAATGAAT
 
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JMFS005C08+           TCTGGAGAGAGAAAGATCAAAGGTTCAATGTTTCTCGATCTGACAGAGAGTGTGGTGAGT
                      ____________________________________________________________
consensus             TCTGGAGAGAGAAAGATCAAAGGTTCAATGTTTCTCGATCTGACAGAGAGTGTGGTGAGT