Contig 001879:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029C23Sequence582001879 (9)ref|XP_009786487.1|7e-44PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR741012532 (5)ref|XP_009786487.1|6e-11PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFF046E03Sequence627001879 (9)ref|XP_009786487.1|2e-44PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR605012532 (5)
JMFS004C12Sequence197001879 (9)
JMFS008E08Sequence623001879 (9)ref|XP_009786487.1|2e-57PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS041G05Sequence614001879 (9)ref|XP_009786487.1|4e-56PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS068G01Sequence618001879 (9)ref|XP_009786487.1|2e-58PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMFS072G07Sequence627001879 (9)ref|XP_009786487.1|4e-59PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR
JMSF009M02Sequence390001879 (9)687012532 (5)
JMSF013D21Sequence231001879 (9)737012532 (5)ref|XP_009786487.1|3e-12PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR

Alignment

This contig is upended


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JMFS008E08+                                                        TGATCTCACTTTGAT
JMFS068G01+                                                        TGATCTCACTTTGAT
JMFS072G07+                                                      CGTGATCTCACTTTGAT
JMFS041G05+                                                                    GAT
                      ____________________________________________________________
consensus                                                        CGTGATCTCACTTTGAT
 
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JMFS008E08+           CTGTTTCAGGAAGCAATGTTATTTGTGCATACACNTCATCTGTCTCTGTTTCGGCCTGAA
JMFS068G01+           CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFS072G07+           CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFS041G05+           CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFF046E03+            TGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
JMFF029C23+                                                                GCCTGAA
                      ____________________________________________________________
consensus             CTGTTTCAGGAAGCAATGTTATTTGTGCATACACCTCATCTGTCTCTGTTTCGGCCTGAA
 
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JMFS008E08+           GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS068G01+           GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS072G07+           GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFS041G05+           GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFF046E03+           GACGAACATTCAGAACTCTGCACAGAATNTTATCTGGTAAATCGAACGAAGGAAGCTGCT
JMFF029C23+           GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
                      ____________________________________________________________
consensus             GACGAACATTCAGAACTCTGCACAGAATTTTATCTGGTAAATCGAACGAAGGAAGCTGCT
 
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JMFS008E08+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS068G01+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS072G07+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFS041G05+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFF046E03+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
JMFF029C23+           GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
                      ____________________________________________________________
consensus             GGTCTACTCCCTGATGGGTAGATGCTTCAAGCTGTTCCATGTGACCTTGCGGAAAATAAT
 
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JMFS008E08+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS068G01+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS072G07+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFS041G05+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFF046E03+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
JMFF029C23+           AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
                      ____________________________________________________________
consensus             AAACTCTTTCCCCTTCACGAGGAACCGTCACAAGTGGTCCAGCACAGGCATGCCACAACT
 
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JMFS008E08+           CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS068G01+           CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS072G07+           CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFS041G05+           CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMFF046E03+           CCTTGTACAAAGGATCATTTGAAGCCTCTGG-TGAGGCCCTCCAGTAAAATGATTTGCAG
JMFF029C23+           CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
JMSF009M02+                 ACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
                      ____________________________________________________________
consensus             CCTTGTACAAAGGATCATTTGAAGCCCCTGGATGAGCCCCTCCAGTAAAATGATTTGCAG
 
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JMFS008E08+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS068G01+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS072G07+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFS041G05+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFF046E03+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMFF029C23+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
JMSF009M02+           CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
                      ____________________________________________________________
consensus             CAATGTGTGCCATCATAAAACTTACTTGAACTGTTGAACTGTTGGAACTTTTTTGTGTGA
 
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JMFS008E08+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS068G01+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS072G07+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFS041G05+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFF046E03+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMFF029C23+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMSF009M02+           TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
JMSF013D21+                                                        ACGCTTCTTAAATAT
                      ____________________________________________________________
consensus             TAATCTCACAATTAGATAACCAACCCTCTCTTGAACCTAATTTAAACGCTTCTTAAATAT
 
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JMFS008E08+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS068G01+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS072G07+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS041G05+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFF046E03+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFF029C23+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMSF009M02+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMSF013D21+           TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
JMFS004C12+                                                       GTCATTTCCACACCCC
                      ____________________________________________________________
consensus             TCAAACGAATTGCAATATTCCGCAGCACAACCTCGGAACAATCCGTCATTTCCACACCCC
 
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JMFS008E08+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS068G01+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS072G07+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS041G05+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFF046E03+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFF029C23+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMSF009M02+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMSF013D21+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
JMFS004C12+           CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
                      ____________________________________________________________
consensus             CGATACACCACACCAAACCCAGCACCTCCCAGTTGACCGATTAACCGGGGAGCAACCAAT
 
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JMFS008E08+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS068G01+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS072G07+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS041G05+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFF046E03+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFF029C23+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMSF009M02+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMSF013D21+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
JMFS004C12+           TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
                      ____________________________________________________________
consensus             TAGGGTTTTCGCCGAAGTCCAAGCCGAAGAAAAGATAGAGAGAGAAAGAGAGATCGGAGA
 
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JMFS008E08+           CGGTCTTT                                                    
JMFS068G01+           CGG                                                         
JMFS072G07+           CGGTCTTTGC                                                  
JMFS041G05+           CGGTCTTTGCC                                                 
JMFF046E03+           CGGTCTTTGCCTGGTGGGAGCCGACAGTA                               
JMFF029C23+           CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC                         
JMSF009M02+           CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC                         
JMSF013D21+           CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTAC                         
JMFS004C12+           CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTACAATTTCTCTCTCATAATATGCGTGT
                      ____________________________________________________________
consensus             CGGTCTTTGCCTGGTGGGAGCCGACAGTAGTTTACAATTTCTCTCTCATAATATGCGTGT