Contig 001878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001G12Sequence375001878 (3)ref|XP_007204952.1|2e-29hypothetical protein PRUPE_ppa000481mg [Prunus persica] gb|EMJ06151.1| hypotheti
JMFS004A10Sequence538001878 (3)ref|XP_009632021.1|8e-89PREDICTED: enhancer of mRNA-decapping protein 4-like [Nicotiana tomentosiformis
JMFS114E10Sequence559001878 (3)emb|CDP13661.1|5e-70unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+                                        TGATGCAATGGGAAGAATATCAGCATTGGCA
                      ____________________________________________________________
consensus                                          TGATGCAATGGGAAGAATATCAGCATTGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           TTTACAATGGAGCTAGTAGCCGGTTTGTTTTCCATGCTAGAACTGAACTCCTGTGGCGTA
                      ____________________________________________________________
consensus             TTTACAATGGAGCTAGTAGCCGGTTTGTTTTCCATGCTAGAACTGAACTCCTGTGGCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           GCTATCTCAATAGAAGCAGAACCAACAGGATTCCTCACTGTAGGCACACTCTCAGAACCA
                      ____________________________________________________________
consensus             GCTATCTCAATAGAAGCAGAACCAACAGGATTCCTCACTGTAGGCACACTCTCAGAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           CCATCATGCACAGGAATTTTGGGTGCAGAACTAGATATAGGTAATTCCGTTGGTTTACTT
                      ____________________________________________________________
consensus             CCATCATGCACAGGAATTTTGGGTGCAGAACTAGATATAGGTAATTCCGTTGGTTTACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           CCAGAGTGCTCATTTTGAGCAAATCCTTCAATACTAATAACCTCGCGTGAGGCACTAGAT
                      ____________________________________________________________
consensus             CCAGAGTGCTCATTTTGAGCAAATCCTTCAATACTAATAACCTCGCGTGAGGCACTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           TCTGACTTCTCTAACATGGCAGTCTCCAGTGGAGGTGGCAAACACTGGGATAGGTCCAAA
                      ____________________________________________________________
consensus             TCTGACTTCTCTAACATGGCAGTCTCCAGTGGAGGTGGCAAACACTGGGATAGGTCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           GCATACTGCTGAATAGCCTGTGTTTGCACACAATACACCTGAATAACCTGTTCCCCGTGC
                      ____________________________________________________________
consensus             GCATACTGCTGAATAGCCTGTGTTTGCACACAATACACCTGAATAACCTGTTCCCCGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           GGTAGTAAATCACTTGTCCCAATAAAACTCAATATTGGCATAGTAACTGTGAATTCTGCT
                      ____________________________________________________________
consensus             GGTAGTAAATCACTTGTCCCAATAAAACTCAATATTGGCATAGTAACTGTGAATTCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           ATGTAATTCATCCGTGTTGATGCTGGATTAGGGCCATATTCTAGGTGCACTGCATATATG
rJMCP001G12-                                     TTAGGACCATATTCTAGGTGCACTGCATATATG
                      ____________________________________________________________
consensus             ATGTAATTCATCCGTGTTGATGCTGGATTAGGGCCATATTCTAGGTGCACTGCATATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114E10+           GCATTCTTTTTTGCATTTGCCAATAAAAATAGACCTGCTTGAGACAA             
rJMCP001G12-          GCGTTCTTTTTGGCATTTGCCAATAAGAGTAAACCAGCTTGAGACAAGGCCACAACTTGA
                      ____________________________________________________________
consensus             GCGTTCTTTTTTGCATTTGCCAATAAGAGTAGACCTGCTTGAGACAAGGCCACAACTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP001G12-          TTAAAAAATCCCTCCCCAACTCGAGTTTCAGCTGAACCCTTCAGCTCTAATGTCTGTGTA
                      ____________________________________________________________
consensus             TTAAAAAATCCCTCCCCAACTCGAGTTTCAGCTGAACCCTTCAGCTCTAATGTCTGTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP001G12-          CAATGCCATGATTCAGCATCAGTTGGAAGCAACCAGCCTTCTTCACTTGCTGATGACCAT
JMFS004A10+            AATGCCATGATTCAGCATCAG-TGGAAGCAACCAGCCTTCTTCACTTGCTGATGACCAT
                      ____________________________________________________________
consensus             CAATGCCATGATTCAGCATCAGTTGGAAGCAACCAGCCTTCTTCACTTGCTGATGACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP001G12-          ATCTTCACTTCTCGATTAAGTGGGCCC                                 
JMFS004A10+           ATCTTCACTTCTCGATTAAGTGGGCCCCCAGTAATTAGTATGATGTGGGCAGGGTGGTTT
                      ____________________________________________________________
consensus             ATCTTCACTTCTCGATTAAGTGGGCCCCCAGTAATTAGTATGATGTGGGCAGGGTGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           GGANCAGCCAAAAATGTAACAGAATTTACAGGTTGGCCATCATGTGGCCGCAGTACAGCA
                      ____________________________________________________________
consensus             GGANCAGCCAAAAATGTAACAGAATTTACAGGTTGGCCATCATGTGGCCGCAGTACAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           ATTGGAGGTGATTTGCGATCCTCCCAAACCTTTATCGTGCCATCTACTGAAGCAGATACA
                      ____________________________________________________________
consensus             ATTGGAGGTGATTTGCGATCCTCCCAAACCTTTATCGTGCCATCTACTGAAGCAGATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           AGACGAGTGATCATCCACTGAGACATCGATAAATCAGTCACTTCTCCATCGTGAGTACCA
                      ____________________________________________________________
consensus             AGACGAGTGATCATCCACTGAGACATCGATAAATCAGTCACTTCTCCATCGTGAGTACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           ACAAGCTGGACACCTTCAACCAAGCGGTCAACTGGACACCTCAGGGGTTCTTCTGCTGAA
                      ____________________________________________________________
consensus             ACAAGCTGGACACCTTCAACCAAGCGGTCAACTGGACACCTCAGGGGTTCTTCTGCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           AATACTTCACCTTTTCCAACTTTAGTGGTATCAATTTTCAGAACTCTTTTTCCAATCCCA
                      ____________________________________________________________
consensus             AATACTTCACCTTTTCCAACTTTAGTGGTATCAATTTTCAGAACTCTTTTTCCAATCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           ACAACAAGAATTTCTTGCTTGTGGCAATGCCAACAGACTCGTGGGTGAAAAGATTCTCCT
                      ____________________________________________________________
consensus             ACAACAAGAATTTCTTGCTTGTGGCAATGCCAACAGACTCGTGGGTGAAAAGATTCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS004A10+           TCTCCCACAATTTGAATAGCAATGACTATCCGGCCTATTATTTGTGGCTTGTCGTCCTCA
                      ____________________________________________________________
consensus             TCTCCCACAATTTGAATAGCAATGACTATCCGGCCTATTATTTGTGGCTTGTCGTCCTCA