Contig 001877:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF038J08-                                                               TTGTTTC
                      ____________________________________________________________
consensus                                                                  TTGTTTC
 
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rJMSF038J08-          TTGTTCTTGTTATCTCAACAAGTTCTATGACAAACAAATGAGAAGAGGGGGAGTAATTTG
                      ____________________________________________________________
consensus             TTGTTCTTGTTATCTCAACAAGTTCTATGACAAACAAATGAGAAGAGGGGGAGTAATTTG
 
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rJMSF038J08-          CAGTGGAATATAGATGGTTAATGACTTCAAAACAACCACACTTTATCTAGCTATTGCAGT
                      ____________________________________________________________
consensus             CAGTGGAATATAGATGGTTAATGACTTCAAAACAACCACACTTTATCTAGCTATTGCAGT
 
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rJMSF038J08-          TCAATGCAAGCTTATTGAAAGCCATCTAGAACTTCTATATAAATGCAGGCCAGCATTCAG
                      ____________________________________________________________
consensus             TCAATGCAAGCTTATTGAAAGCCATCTAGAACTTCTATATAAATGCAGGCCAGCATTCAG
 
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rJMSF038J08-          TAAACTCCTAGGATGGTGTTAATGGAAGATGCAAGATTTGAAGACTGTTCTATTCCATGT
                      ____________________________________________________________
consensus             TAAACTCCTAGGATGGTGTTAATGGAAGATGCAAGATTTGAAGACTGTTCTATTCCATGT
 
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rJMSF038J08-          ATAAGTGGCTTACTTGGATGCGAAAATCGCTTCTAAATCTTTGTACAATCCTCTTGGTTT
                      ____________________________________________________________
consensus             ATAAGTGGCTTACTTGGATGCGAAAATCGCTTCTAAATCTTTGTACAATCCTCTTGGTTT
 
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rJMSF038J08-          TGTCTTGAAATCTGCTGAAGAATCATCCACAGATGAGCTCCCACTCCTCTTTGTGTTCCA
                      ____________________________________________________________
consensus             TGTCTTGAAATCTGCTGAAGAATCATCCACAGATGAGCTCCCACTCCTCTTTGTGTTCCA
 
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rJMSF038J08-          GACGTAATCACTCCATCTCGTCCTGCTGGTCGAGGGATCAGCCGGGCTTCCTTCTCTGCT
                      ____________________________________________________________
consensus             GACGTAATCACTCCATCTCGTCCTGCTGGTCGAGGGATCAGCCGGGCTTCCTTCTCTGCT
 
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rJMSF038J08-          GAAGCTCGACTTTGCTAGCTCCCGTATTTGTCTTAGCCACGACTTCTCGCCCGAGTTTCT
JMFS003E09+                        GCTAGCTCCCGTATTTGTCTTAGCCACGACTTCTCGCCCGAGTTTCT
JMFS003E10+                        GCTAGCTCCCGTATTTGTCTTAGCCACGACTTCTCGCCCGAGTTTCT
                      ____________________________________________________________
consensus             GAAGCTCGACTTTGCTAGCTCCCGTATTTGTCTTAGCCACGACTTCTCGCCCGAGTTTCT
 
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rJMSF038J08-          AGTATCTGTACTCCTGCTTTTATCGAGAGTAGAAGGCGTGGTGGTGGTTCCCGTGCTCTC
JMFS003E09+           AGTATCTGTACTCCTGCTTTTATCGAGAGTAGAAGGCGTGGTGGTGGTTCCCGTGCTCTC
JMFS003E10+           AGTATCTGTACTCCTGCTTTTATCGAGAGTAGAAGGCGTGGTGGTGGTTCCCGTGCTCTC
                      ____________________________________________________________
consensus             AGTATCTGTACTCCTGCTTTTATCGAGAGTAGAAGGCGTGGTGGTGGTTCCCGTGCTCTC
 
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rJMSF038J08-          GCCTTCCCCGCCCCTCTTAAACAACGAGCATTTCGTGTCGAGCTTTTTGATGAGTCTTTG
JMFS003E09+           GCCTTCCCCGCCCCTCTTAAACAACGAGCATTTCGTGTCGAGCTTTTTGATGAGTCTTTG
JMFS003E10+           GCCTTCCCCGCCCCTCTTAAACAACGAGCATTTCGTGTCGAGCTTTTTGATGAGTCTTTG
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consensus             GCCTTCCCCGCCCCTCTTAAACAACGAGCATTTCGTGTCGAGCTTTTTGATGAGTCTTTG
 
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rJMSF038J08-          AGGAAAGAAGAACAGAAGGAACCCTATGGATGCTGCTTTAAGGCCTAGACAGAAAGAGTT
JMFS003E09+           AGGAAAGAAGAACAGAAGGAACCCTATGGATGCTGCTTTAAGGCCTAGACAGAAAGAGTT
JMFS003E10+           AGGAAAGAAGAACAGAAGGAACCCTATGGATGCTGCTTTAAGGCCTAGACAGAAAGAGTT
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consensus             AGGAAAGAAGAACAGAAGGAACCCTATGGATGCTGCTTTAAGGCCTAGACAGAAAGAGTT
 
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rJMSF038J08-          CTCAGCAGGGTCTAACCGCTTTATCTGCGTGTATAAAGCGTACCATTCGTTTGCCGTTTC
JMFS003E09+           CTCAGCAGGGTCTAACCGCTTTATCTGCGTGTATAAAGCGTACCATTCGTTTGCCGTTTC
JMFS003E10+           CTCAGCAGGGTCTAACCGCTTTATCTGCGTGTATAAAGCGTACCATTCGTTTGCCGTTTC
                      ____________________________________________________________
consensus             CTCAGCAGGGTCTAACCGCTTTATCTGCGTGTATAAAGCGTACCATTCGTTTGCCGTTTC
 
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rJMSF038J08-          TGCTAACAACGCGATTATGCATAGCCCGAGCATGAAGATCCCGATTCTCGTCTCGTCTTT
JMFS003E09+           TGCTAACAACGCGATTATGCATAGCCCGAGCATGAAGATCCCGATTCTCGTCTCGTCTTT
JMFS003E10+           TGCTAACAACGCGATTATGCATAGCCCGAGCATGAAGATCCCGATTCTCGTCTCGTCTTT
                      ____________________________________________________________
consensus             TGCTAACAACGCGATTATGCATAGCCCGAGCATGAAGATCCCGATTCTCGTCTCGTCTTT
 
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rJMSF038J08-          GGCTGAGAATTCCCACTCCAAGAGGACAATGCACATAGCGAAAATGGCAACTTCACTGGT
JMFS003E09+           GGCTGAGAATTCCCACTCCAAGAGGACAATGCACATAGCGAAAATGGCAACTTCACTGGT
JMFS003E10+           GGCTGAGAATTCCCACTCCAAGAGGACAATGCACATAGCGAAAATGGCAACTTCACTGGT
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consensus             GGCTGAGAATTCCCACTCCAAGAGGACAATGCACATAGCGAAAATGGCAACTTCACTGGT
 
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rJMSF038J08-          GACTGATAGGATCTCAACTAGCTGCACTTTCTTCTTTATGAAAGGCTTCT          
JMFS003E09+           GACTGATAGGATCTCAACTAGCTGCACTTTCTTCCTTATGAAAGGCTTCTTAAGCACCAT
JMFS003E10+           GACTGATAGGATCTCAACTAGCTGCACTTTCTTCCTCATGAAAGGCTTCTTAAGCACCAT
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consensus             GACTGATAGGATCTCAACTAGCTGCACTTTCTTCCTTATGAAAGGCTTCTTAAGCACCAT
 
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JMFS003E09+           GAAGAAGAGCTGGAAGGCCGCGAGGGAAAGCATGAGGATCGTGGGCGTCTTAGACGACCA
JMFS003E10+           GAAGAAGAGCTGGAAGGCCGCGAGGGAAAGCATGAGGATCGTGGGCGTCTTAGACGACCA
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consensus             GAAGAAGAGCTGGAAGGCCGCGAGGGAAAGCATGAGGATCGTGGGCGTCTTAGACGACCA
 
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JMFS003E09+           GTTCTTTAAATAGGCGCTCGCCACGATCCCGAGAGCCACGCGTTTTGCAGTGTCGAGGAA
JMFS003E10+           GTTCTTTAAATAGGCGCTCGCCACGATCCCGAGAGCCACGCGTTTTGCAGTGTCGAGGAA
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consensus             GTTCTTTAAATAGGCGCTCGCCACGATCCCGAGAGCCACGCGTTTTGCAGTGTCGAGGAA