Contig 001871:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+                                                                TCCTTCC
                      ____________________________________________________________
consensus                                                                  TCCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           GCTTGATCTCCGCCACGCGCCGCCGCACGTCGTCGTACATGACGCAGCTCCGGTTGGCAT
JMFN046E13+                             GCCGCCGCACGTTGTCGTACATGACGCAGCTCCGGTGNGCAT
                      ____________________________________________________________
consensus             GCTTGATCTCCGCCACGCGCCGCCGCACGTTGTCGTACATGACGCAGCTCCGGTTGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           AGGACCCTTCGATCTCGAAAACCCTGGCATTCTTCGATCCTTTCGCTCCGGAGCCACGGA
JMFN046E13+           AGGACCCTTCGATCTCGAAAACCCTGGCATTCTTCGATCCTTTCGCTCCGGAGCCACGGA
                      ____________________________________________________________
consensus             AGGACCCTTCGATCTCGAAAACCCTGGCATTCTTCGATCCTTTCGCTCCGGAGCCACGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           GCGAGGTCACGTGCGCTAGGGACTTCGAATTCAGGAGGCTCACGTGCTTCCTAACCGAAT
JMFN018J10+                                                  TCACGTGCTTCCTAACCGAAT
JMFN046E13+           GCGAGGTCACGTGCGCTAGGGACTTCGAATTCAGGAGGCTCACGTGCTTCCTAACCGAAT
                      ____________________________________________________________
consensus             GCGAGGTCACGTGCGCTAGGGACTTCGAATTCAGGAGGCTCACGTGCTTCCTAACCGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           ACAGCGGACGATCCGCCGTCTCTCCGTCGTACACCACCCAGTTGTCCGCCAAGCTTAGCC
JMFN018J10+           ACAGCGGACGATCCGCCGTCTCTCCGTCATACACCACCCAGTTGTCCGCCAAGCTTAGCC
JMFN046E13+           ACAGCGGACGATCCGCCGTCTCTCCGTCGTACACCACCCAGTTGTCCGCCAAGCTTAGCC
                      ____________________________________________________________
consensus             ACAGCGGACGATCCGCCGTCTCTCCGTCGTACACCACCCAGTTGTCCGCCAAGCTTAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           TCTTGCGGCGAATAGTGAAGAGCGAGTTGCCGGAGGCGTCCATGAGAACGATTTCTGCTC
JMFN018J10+           TCTTGCGGCGAATAGTGAAGAGCGAGTTGCCGGAGGCGTCCATGAGAACGATTTCTGCTC
JMFN046E13+           TCTTGCGGCGAATAGTGAAGAGCGAGTTGCCGGAGGCGTCCATGAGAACGATTTCTGCTC
                      ____________________________________________________________
consensus             TCTTGCGGCGAATAGTGAAGAGCGAGTTGCCGGAGGCGTCCATGAGAACGATTTCTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           GATTGCTGGAGTCATAGTAGTTATCGACGCGGTAGACGAGGTTCCCCTTATCGTCGAACA
JMFN018J10+           GA-TGCTGGAGTCATAGTAGTTATCGACGCGGTAGACGAGGTTCCCCTTATCGTCGAACA
JMFN046E13+           GATTGCTGGAGTCATAGTAGTTATCGACGCGGTAGACGAGGTTCCCCTTATCGTCGAACA
                      ____________________________________________________________
consensus             GATTGCTGGAGTCATAGTAGTTATCGACGCGGTAGACGAGGTTCCCCTTATCGTCGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           CCGTAAAGCCGTCGCAGTTGAAAAGCAGCGACTTCTTCCACACGGTGAGCACTGTAGGCT
JMFN018J10+           CCGTAAAGCCGTCGCAGTTGAAAAGCAGCGACTTCTTCCACACGGTGAGCACTGTAGGCT
JMFN046E13+           CCGTAAAGCCGTCGCAGTTGAAAAGCAGCGACTTCTTCCACACGGTGAGCACTGTAGGCT
                      ____________________________________________________________
consensus             CCGTAAAGCCGTCGCAGTTGAAAAGCAGCGACTTCTTCCACACGGTGAGCACTGTAGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           GCGGCGGCGATGAGAGGCAGTGGCAGGCCGGCCTGGGAAGCTCCTCATCAGCCAGAGCAG
JMFN018J10+           GCGGCGGCGATGAGAGGCAGTGGCAGGCCGGCCTGGGAAGCTCCTCATCAGCCAGAGCAG
JMFN046E13+           GCGGCGGCGATGAGAGGCAGTGGCAGGCCGGCCTGGGAAGCTCCTCATCAGCCAGAGCAG
                      ____________________________________________________________
consensus             GCGGCGGCGATGAGAGGCAGTGGCAGGCCGGCCTGGGAAGCTCCTCATCAGCCAGAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           TAGGAATGGCGGAGGCCGCGTTTGGGTGTACCTTTGTCATCAATTATCAGAAGTGACGTT
JMFN018J10+           TAGGAATGGCGGAGGCCGCGTTTGGGTGTACCTTTGTCATCAATTATCAGAAGTGACGTT
JMFN046E13+           TAGGAATGGCGGAGGCCGCGTTTGGGTGTACCTTTGTCATCAATTATCAGAAGTGACGTT
                      ____________________________________________________________
consensus             TAGGAATGGCGGAGGCCGCGTTTGGGTGTACCTTTGTCATCAATTATCAGAAGTGACGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS066H12+           CTGACTGGGAAGAATGTAGAGAGATGTAGGTGGTTGCAGAGGGAAGAGAGAGAGA     
JMFN018J10+           CTGACTGGGAAGAATGTAGAGAGATGTAGGTGGTTGCAGAGGGAAGAGAGAGAGA     
JMFN046E13+           CTGACTGGGAAGAATGTAGAGAGATGTAGGTGGTTGCAGAGGGAAGAGAGAGAGACGATG
                      ____________________________________________________________
consensus             CTGACTGGGAAGAATGTAGAGAGATGTAGGTGGTTGCAGAGGGAAGAGAGAGAGACGATG