Contig 001870:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019I21Sequence600010519 (11)emb|CDP16685.1|3e-50unnamed protein product [Coffea canephora]628001870 (9)ref|XP_009596046.1|5e-74PREDICTED: chloride channel protein CLC-b-like [Nicotiana tomentosiformis]
JMFF041D07Sequence658010519 (11)emb|CDP16685.1|2e-66unnamed protein product [Coffea canephora]476001870 (9)ref|XP_006357190.1|1e-37PREDICTED: chloride channel protein CLC-b-like [Solanum tuberosum]
JMFF050I04Sequence590010519 (11)ref|XP_011097296.1|2e-34PREDICTED: chloride channel protein CLC-b-like [Sesamum indicum]566001870 (9)ref|XP_009761471.1|5e-46PREDICTED: chloride channel protein CLC-b-like [Nicotiana sylvestris]
JMFN010F18Sequence474001870 (9)ref|XP_006357190.1|4e-64PREDICTED: chloride channel protein CLC-b-like [Solanum tuberosum]
JMFN028P06Sequence613001870 (9)gb|AAD29679.1|AF133209_13e-93CLC-Nt2 protein [Nicotiana tabacum]
JMFN045H19Sequence573001870 (9)gb|AAD29679.1|AF133209_19e-62CLC-Nt2 protein [Nicotiana tabacum]
JMFS068E09Sequence599001870 (9)ref|XP_009761471.1|3e-104PREDICTED: chloride channel protein CLC-b-like [Nicotiana sylvestris]
JMSF020G03Sequence713010519 (11)emb|CDP16685.1|5e-76unnamed protein product [Coffea canephora]768001870 (9)gb|AAD29679.1|AF133209_13e-119CLC-Nt2 protein [Nicotiana tabacum]
JMSF052B13Sequence693010519 (11)emb|CDP16685.1|2e-86unnamed protein product [Coffea canephora]824001870 (9)gb|AAD29679.1|AF133209_12e-120CLC-Nt2 protein [Nicotiana tabacum]

Alignment

This contig is upended


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JMFN028P06-                                                                 TCATAT
                      ____________________________________________________________
consensus                                                                   TCATAT
 
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JMFN028P06-           TCCTTGAGCTCACAAACAATCTCCTTCTCCTCCCAATAACCATGCTTGTGCTTCTGATTG
JMFS068E09-                                                      GCTTGTGCTTCTGATTG
rJMSF052B13+                    CACAAACAATCTCCTTCTCCTCCCAATAACCATGCTTGTGCTTCTGATTG
                      ____________________________________________________________
consensus             TCCTTGAGCTCACAAACAATCTCCTTCTCCTCCCAATAACCATGCTTGTGCTTCTGATTG
 
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JMFN028P06-           CAAAAAGCGTAGGAGACTGCTTCAACCCGAGTATCTATGACATAATATTGGAACTGAAAG
rJMSF020G03+           AAAAAGCGTAGGAGACTGCTTCAACCCGAGTATCTATGACATAATATTGGAACTGAAAG
JMFS068E09-           CAAAAAGCGTAGGAGACTGCTTCAACCCGAGTATCTATGACATAATATTGGAACTGAAAG
rJMSF052B13+          CAAAAAGCGTAGGAGACTGCTTCAACCCGAGTATCTATGACATAATATTGGAACTGAAAG
                      ____________________________________________________________
consensus             CAAAAAGCGTAGGAGACTGCTTCAACCCGAGTATCTATGACATAATATTGGAACTGAAAG
 
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JMFN028P06-           GCCTGCCTTTCCTGGATGCAAACCCTGAGCCATGGATGAGAAACATAACAGTGGGTGAGC
rJMSF020G03+          GCCTGCCTTTCCTGGATGCAAACCCTGAGCCATGGATGAGAAACATAACAGTGGGTGAGC
JMFS068E09-           GCCTGCCTTTCCTGGATGCAAACCCTGAGCCATGGATGAGAAACATAACAGTGGGTGAGC
rJMSF052B13+          GCCTGCCTTTCCTGGATGCAAACCCTGAGCCATGGATGAGAAACATAACAGTGGGTGAGC
                      ____________________________________________________________
consensus             GCCTGCCTTTCCTGGATGCAAACCCTGAGCCATGGATGAGAAACATAACAGTGGGTGAGC
 
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JMFN028P06-           TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
rJMFF019I21+          TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
rJMSF020G03+          TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
JMFS068E09-           TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
rJMSF052B13+          TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
                      ____________________________________________________________
consensus             TTGCAGATGTGAAGGCACCAGTAGTTACGCTCTGTGGAATAGAGAAGGTGGGTCGTATTG
 
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JMFN028P06-           TGGAGGTGCTTAAGAACACGACGTACAATGG-TTTCCCTGTGGTGGATGAAGAAAGAGTG
rJMFF019I21+          TGGAGGTGCTTAAGAACACGACGTACAATGGTTTTCCCTGTGGTGGATGAAGAAAGAGTG
rJMSF020G03+          TGGAGGTGCTTAAGAACACGACGTACAATGG-TTTCCCTGTGGTGGATGAAGAAAGAGTG
JMFS068E09-           TGGAGGTGCTTAAGAACACGACGTACAATGG-TTTCCCTGTGGTGGATGAAGAAAGAGTG
rJMSF052B13+          TGGAGGTGCTTAAGAACACGACGTACAATGG-TTTCCCTGTGGTGGATGAAGAAAGAGTG
                      ____________________________________________________________
consensus             TGGAGGTGCTTAAGAACACGACGTACAATGG-TTTCCCTGTGGTGGATGAAGAAAGAGTG
 
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JMFN028P06-           GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
rJMFF019I21+          GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
rJMSF020G03+          GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
JMFS068E09-           GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
rJMSF052B13+          GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
rJMFF050I04+                                                         ACTGAAGAAGAAG
JMFN045H19-                                        AACTCACCTTCTGCTGGTACTGAAGAAGAAG
                      ____________________________________________________________
consensus             GCAACAGAACTTCATGGAGTGGTGCTAAGAACTCACCTTCTGCTGGTACTGAAGAAGAAG
 
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JMFN028P06-           TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
rJMFF019I21+          TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
rJMSF020G03+          TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
JMFS068E09-           TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
rJMSF052B13+          TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
JMFN010F18-                            GAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
rJMFF050I04+          TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
rJMFF041D07+                                      AGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
JMFN045H19-           TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
                      ____________________________________________________________
consensus             TATTTCATGCATGAAAGGAGGAGGACAGAGGAGTGGGAAGTGAGGGAGAAATTCAGCTGG
 
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JMFN028P06-           GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
rJMFF019I21+          GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
rJMSF020G03+          GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
JMFS068E09-           GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
rJMSF052B13+          GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
JMFN010F18-           GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
rJMFF050I04+          GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAAT-ATGAAATG
rJMFF041D07+          GTGGATTTGGCTGAAAAATGGGGTAAAATTTAAAATGTGGCAGTGCCCAATGATGAAATG
JMFN045H19-           GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
                      ____________________________________________________________
consensus             GTGGATTTGGCTGAAAGATGGGGTAAGATTGAAGATGTGGCAGTGACAAATGATGAAATG
 
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JMFN028P06-           GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
rJMFF019I21+          GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
rJMSF020G03+          GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
JMFS068E09-           GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
rJMSF052B13+          GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
JMFN010F18-           GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
rJMFF050I04+          GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
rJMFF041D07+          GGGATGTTTGTTGGCCTGCATCCCCTTACCAAAACAACCCCCTTTTCAGGTTCAGAAAGC
JMFN045H19-           GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
                      ____________________________________________________________
consensus             GAGATGTATGTTGACCTGCATCCCCTTACCAATACAACCCCCTTTACAGTATCAGAAAGC
 
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JMFN028P06-           ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
rJMFF019I21+          ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
rJMSF020G03+          ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
JMFS068E09-           ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
rJMSF052B13+          ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
JMFN010F18-           ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
rJMFF050I04+          ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
rJMFF041D07+          ATATCCGTTGCAAAGGCAATGGGGCTGTTTAGGCAGGTGGGACTTTGTCCCATGCTCCTT
JMFN045H19-           ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
                      ____________________________________________________________
consensus             ATATCAGTTGCAAAGGCAATGGTGCTGTTTAGGCAGGTCGGACTTCGTCACATGCTCATT
 
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JMFN028P06-           GTACCCAA                                                    
rJMFF019I21+          GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
rJMSF020G03+          GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
JMFS068E09-           GTACCCAAATATCAGGCAGCGGNGGTATCTCCAGTGGTAGGAA                 
rJMSF052B13+          GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
JMFN010F18-           GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
rJMFF050I04+          GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
rJMFF041D07+          GGACCCAAAAATCAGGCAGCGGGGGGATTTCCCGTGGGAGGAATTTTGGCCAGGCAAGAC
JMFN045H19-           GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
                      ____________________________________________________________
consensus             GTACCCAAATATCAGGCAGCGGGGGTATCTCCAGTGGTAGGAATCTTGACCAGGCAAGAC
 
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rJMFF019I21+          CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
rJMSF020G03+          CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
rJMSF052B13+          CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
JMFN010F18-           CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
rJMFF050I04+          CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
rJMFF041D07+          CCCAGGGGCCCCAACATTTTGGGGGTTTTCCCCCATCTAGCCAAATCAAAGGGCAGTAAT
JMFN045H19-           CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
                      ____________________________________________________________
consensus             CTCAGGGCACACAACATCTTGGCTGTCTTCCCTCATCTAGCCAAATCAAAGGGCAGTAAT
 
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rJMFF019I21+          AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTATATA
rJMSF020G03+          AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTATATA
rJMSF052B13+          AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTGTATA
JMFN010F18-           AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTATATA
rJMFF050I04+          AAGGG                                                       
rJMFF041D07+          AAGGGGCCCTGAAAAAAAAAAAGGGGGGTAGGGTATTTTTCTTGCAACATTCTTTAAAAA
JMFN045H19-           AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTATATA
                      ____________________________________________________________
consensus             AAGGGGCACTGAGAATAAAAATGGCTGCTAGGCTATCTTTCTTGCAACATTCTTTATATA
 
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rJMFF019I21+          TTCCTTTTAATTTGCACTTGTATTCCCA                                
rJMSF020G03+          TTCCTTTTAATTTGCACTTGTATTCCCAATTCACATTCTT                    
rJMSF052B13+          TTCCTTTTAATTTGCACTTGTATTCCCAATTCACATTCTTTCTCAGAGATTCCAA     
JMFN010F18-           TTCCTTTTAATTTGCACTTGTATTCCCAATTCACATTCTTTCTCAGAGATTCCAACATAA
rJMFF041D07+          TTCCCTTTAATTTGCCCTTGGATTCCCCATTCCCATTTTTTTTCAGAGATTCCCACATAA
JMFN045H19-           TTCCTTTTAATTTGCACTTGTATTCCCAATTCACATTCTTTCTCAGAGATTCCAACATAA
                      ____________________________________________________________
consensus             TTCCTTTTAATTTGCACTTGTATTCCCAATTCACATTCTTTCTCAGAGATTCCAACATAA
 
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JMFN045H19-           GAAGAAAAGACAACATTCTTTTTATCATCAATTATTTATATATATATATATAATAACAAA
                      ____________________________________________________________
consensus             GAAGAAAAGACAACATTCTTTTTATCATCAATTATTTATATATATATATATAATAACAAA