| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030F06 | Sequence | 570 | 016296 | ref|XP_008237302.1| | 1e-13 | PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume] | 663 | 001864 (10) | dbj|BAF46298.1| | 7e-117 | hypothetical protein [Ipomoea nil] |
| JMFN003I05 | Sequence | 623 | 001864 (10) | dbj|BAF46298.1| | 7e-140 | hypothetical protein [Ipomoea nil] | |||||
| JMFN020O07 | Sequence | 344 | 001864 (10) | dbj|BAF46298.1| | 2e-62 | hypothetical protein [Ipomoea nil] | |||||
| JMFN025G13 | Sequence | 656 | 001864 (10) | dbj|BAF46298.1| | 9e-134 | hypothetical protein [Ipomoea nil] | |||||
| JMFN028P16 | Sequence | 609 | 001864 (10) | dbj|BAF46298.1| | 3e-115 | hypothetical protein [Ipomoea nil] | |||||
| JMFN035I19 | Sequence | 561 | 001864 (10) | dbj|BAF46298.1| | 3e-56 | hypothetical protein [Ipomoea nil] | |||||
| JMFN042O17 | Sequence | 636 | 001864 (10) | ref|XP_010670869.1| | 105 | PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris] | |||||
| JMFN043C24 | Sequence | 343 | 001864 (10) | dbj|BAF46298.1| | 2e-62 | hypothetical protein [Ipomoea nil] | |||||
| JMFS037B04 | Sequence | 574 | 001864 (10) | dbj|BAF46298.1| | 3e-104 | hypothetical protein [Ipomoea nil] | |||||
| JMFS086H03 | Sequence | 630 | 001864 (10) | dbj|BAF46298.1| | 3e-121 | hypothetical protein [Ipomoea nil] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS037B04+ TGG
JMFN028P16+ TGG
____________________________________________________________
consensus TGG
. : . : . : . : . : . :
JMFS037B04+ TAATTAGTACTTAGTATTATTTTTAAACTTTGGATTGCTATTTTGTTATATTTTTTTTTT
JMFN028P16+ TAATTAGTACTTAGTATTATTTTTAAACTTTGGATTGCTATTTTGTTATA-TTTTTTTTT
JMFN025G13+ TTTTAAACTTTGGATTGCTATTTNGTTATA--TTTTTTTT
rJMFF030F06- TTTTAAACTTTGGATTGCTATTTTGTTATA-TTTTTTTTT
____________________________________________________________
consensus TAATTAGTACTTAGTATTATTTTTAAACTTTGGATTGCTATTTTGTTATA-TTTTTTTTT
. : . : . : . : . : . :
JMFS037B04+ TGATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
JMFN043C24+ ATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
JMFN020O07+ GATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
JMFN028P16+ TGATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
JMFN025G13+ TGATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
rJMFF030F06- TGATCGAAAGGACGGGGTANACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
JMFN003I05+ ACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
____________________________________________________________
consensus TGATCGAAAGGACGGGGTAGACCCGGGGGCGACTCAAGCTACTGGTTGAGTCTCCCTAAC
. : . : . : . : . : . :
JMFS037B04+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
JMFN043C24+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
JMFN020O07+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
JMFN028P16+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
JMFN025G13+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
rJMFF030F06- TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCC-CTTTGCTAATGATGGG
JMFN003I05+ TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
____________________________________________________________
consensus TCTGCGAGCACTTGTAACACGGGCTATATCTTGGAGGTAAGCCTCTTTGCTAATGATGGG
. : . : . : . : . : . :
JMFS037B04+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFN043C24+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFN020O07+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFN028P16+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFN025G13+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
rJMFF030F06- GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFN003I05+ GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
JMFS086H03+ CGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
____________________________________________________________
consensus GCACGAGCTGAAAGTTGTCCAAGCATCACTTTGGAAGGCGCCGTAACCGGCTAAGGCATC
. : . : . : . : . : . :
JMFS037B04+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
JMFN043C24+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
JMFN020O07+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
JMFN028P16+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
JMFN025G13+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
rJMFF030F06- TGCAACCCTGTTTTGCTCTCTATANACAGCGCGAATGGANATTTTCCAATCCTTCGTTAG
JMFN003I05+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
JMFS086H03+ TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
____________________________________________________________
consensus TGCAACCCTGTTTTGCTCTCTATAGACAGCGCGAATGGAGATTTTCCAATCCTTCGTTAG
. : . : . : . : . : . :
JMFS037B04+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFN043C24+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFN020O07+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFN028P16+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFN025G13+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
rJMFF030F06- CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFN003I05+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
JMFS086H03+ CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
____________________________________________________________
consensus CCATAATCTGGCTTCCTCAATAATGCCTTGAATAGGACCCCGAAGGTTATCACTGGCCTG
. : . : . : . : . : . :
JMFS037B04+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
JMFN043C24+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGAACTCAGC
JMFN020O07+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGAACTCAGC
JMFN028P16+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
JMFN025G13+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTTTC
rJMFF030F06- AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
JMFN003I05+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
JMFS086H03+ AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
____________________________________________________________
consensus AATCCATTCCACCACCTTTCTAGCATCGCTCTGGATCTCAGCTTCGCGAACTCCTCTCTC
. : . : . : . : . : . :
JMFS037B04+ CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
JMFN028P16+ CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
JMFN025G13+ CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
rJMFF030F06- CCAAAGCCACTGCATTCCCAANACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
JMFN003I05+ CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
JMFS086H03+ CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
JMFN035I19+ ACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
____________________________________________________________
consensus CCAAAGCCACTGCATTCCCAAGACAATGGCTTTAGCTTCTATGGCTTCCGGGGTCTCCAG
. : . : . : . : . : . :
JMFS037B04+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
JMFN028P16+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
JMFN025G13+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
rJMFF030F06- NGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
JMFN003I05+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
JMFS086H03+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
JMFN035I19+ TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
____________________________________________________________
consensus TGGTATTTTATACGCAAATCCTCCGAGCCACGTTCCTTTGTCCTCCCTGAGTGCACCTCC
. : . : . : . : . : . :
JMFS037B04+ TATCTCAACATTGTTTGTTGAAGCTTTGACA
JMFN028P16+ TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
JMFN025G13+ TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
rJMFF030F06- TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
JMFN003I05+ TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
JMFS086H03+ TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
JMFN035I19+ TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
____________________________________________________________
consensus TATTCCAGCATTGTTTGTTGAAGCTTTGACACTGCCATCAATGTTGAGAGTGAGACGGCT
. : . : . : . : . : . :
JMFN028P16+ ATTCTTC
JMFN025G13+ ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
rJMFF030F06- ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
JMFN003I05+ ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
JMFS086H03+ ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
JMFN035I19+ ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
____________________________________________________________
consensus ATTCTTCGAAGGATTCCAGCATAGGTGAACAGTTCGTTCCTTCGTTGTTCTTCCCTGCAT
. : . : . : . : . : . :
JMFN025G13+ TTGCTCTTC
rJMFF030F06- TTGCTCTTCTCTCAC
JMFN003I05+ TTGCTCTTCTCTCACAAAAGCACGGCTGACTTCC
JMFS086H03+ TTGCTCTTCTCTCACAAAAGCACGGCTGACTTCCTCCTTCGCTTCTCTAATCCATGCGGC
JMFN035I19+ TTGCTCTTCTCTCACAAAAGCACGGCTGACTTCCTCCTTCGCTTCTCTAATCCATGCGGC
____________________________________________________________
consensus TTGCTCTTCTCTCACAAAAGCACGGCTGACTTCCTCCTTCGCTTCTCTAATCCATGCGGC
. : . : . : . : . : . :
JMFS086H03+ TTTCCTTTGTGTACTCCAGGCTTCGTCTTTGAAGATTCTATTGTTTCTCCATCGCCAAAG
JMFN035I19+ TTTCCTTTGTGTACTCCAGGCTTCGTCTTTGAAGATTCTATTGTTTCTCCATCGCCAAAG
JMFN042O17+ GTCTTTGAAGATTCTATNGTTTCTCCATCGCCAAAG
____________________________________________________________
consensus TTTCCTTTGTGTACTCCAGGCTTCGTCTTTGAAGATTCTATTGTTTCTCCATCGCCAAAG
. : . : . : . : . : . :
JMFS086H03+ CCACCACACCGTAATGGCAAAAACTCGAG
JMFN035I19+ CCACCACACCGTAATGGCAAAAATTCGAGGCCAATCTGTGTCGCCACCCTTCTTCTCACC
JMFN042O17+ CCACCACACCGTAATGGCAAAAATTCGAGGCCAATCTGTGTCGCCACCCTTCTTCTCACC
____________________________________________________________
consensus CCACCACACCGTAATGGCAAAAATTCGAGGCCAATCTGTGTCGCCACCCTTCTTCTCACC
. : . : . : . : . : . :
JMFN035I19+ TGAAATGTTAGTTTCCAGCCAGGCTTGAAAGTTCTGTTGGTGCCAAGAGTCATACCTTTC
JMFN042O17+ TGAAATGTTAGTTTCCAGCCAGGCTTGAAAGTTCTGTTGGTGCCAAGAGTCATACCTTTC
____________________________________________________________
consensus TGAAATGTTAGTTTCCAGCCAGGCTTGAAAGTTCTGTTGGTGCCAAGAGTCATACCTTTC
. : . : . : . : . : . :
JMFN035I19+ ATTCCCTGCAATAATTTTCCACACCTCCTTCGCATGCTTACATTTTCTGATGATGTGCTC
JMFN042O17+ ATTCCCTGCAATAATTTTCCACACCTCCTTCGCATGCTTACATTTTCTGATGATGTGCTC
____________________________________________________________
consensus ATTCCCTGCAATAATTTTCCACACCTCCTTCGCATGCTTACATTTTCTGATGATGTGCTC
. : . : . : . : . : . :
JMFN035I19+ TATGGTCTCATCGCATTCTGGGCATACAC
JMFN042O17+ TATGGTCTCATCGCATTCTGGGCATACACCGCATCTGCCATCTCCAGTGAACCCTCTTCG
____________________________________________________________
consensus TATGGTCTCATCGCATTCTGGGCATACACCGCATCTGCCATCTCCAGTGAACCCTCTTCG
. : . : . : . : . : . :
JMFN042O17+ ATATCTCTCTGCATTTCCCATTAGTCGGCCATGCATGGCAATCCAAAGGAGCGCTTTCAT
____________________________________________________________
consensus ATATCTCTCTGCATTTCCCATTAGTCGGCCATGCATGGCAATCCAAAGGAGCGCTTTCAT
. : . : . : . : . : . :
JMFN042O17+ CTTGTTTGGTACTTTGATTTTCCACATCTTACCCCATACTGGATCCACCACCAAATATCA
____________________________________________________________
consensus CTTGTTTGGTACTTTGATTTTCCACATCTTACCCCATACTGGATCCACCACCAAATATCA
. : . : . : . : . : . :
JMFN042O17+ ACAAACGCTTGCAAAATCATGAATTTATAGCCCGTTTGGTTCACGGAATCAATTTGGAGG
____________________________________________________________
consensus ACAAACGCTTGCAAAATCATGAATTTATAGCCCGTTTGGTTCACGGAATCAATTTGGAGG
. : . : . : . : . : . :
JMFN042O17+ GAATAAGAATGTTATTCCATAGGGAATAGAATATGTAAGGAATAGAATAGAAATTGTATT
____________________________________________________________
consensus GAATAAGAATGTTATTCCATAGGGAATAGAATATGTAAGGAATAGAATAGAAATTGTATT
. : . : . : . : . : . :
JMFN042O17+ CTGTTGTTTGGTTCAATGAAGGAATAGACTTTGGGAATTGTATTCAAACGTTTGGTTGGT
____________________________________________________________
consensus CTGTTGTTTGGTTCAATGAAGGAATAGACTTTGGGAATTGTATTCAAACGTTTGGTTGGT
. : . : . : . : . : . :
JMFN042O17+ TAAGGAATAGAAATGGAATATATGTTTAAAAGGCTCACAGACTCGTAGAACAGAATTTGT
____________________________________________________________
consensus TAAGGAATAGAAATGGAATATATGTTTAAAAGGCTCACAGACTCGTAGAACAGAATTTGT