Contig 001862:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010O13Sequence499001862 (6)prf||1103278B3e-19ORF
JMFN033M12Sequence499001862 (6)prf||1103278B3e-19ORF
JMFN036B20Sequence499001862 (6)prf||1103278B4e-19ORF
JMFN041L19Sequence563001862 (6)prf||1103278B3e-19ORF
JMFN044I05Sequence563001862 (6)prf||1103278B3e-19ORF
JMFN045O01Sequence562001862 (6)prf||1103278B3e-19ORF

Alignment

This contig is upended


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JMFN044I05+                                                CGCGTTAAGATACATTGATGAGT
JMFN045O01+                                                CGCGTTAAGATACATTGATGAGT
JMFN033M12+                                                CGCGTTAAGATACATTGATGAGT
JMFN010O13+                                                CGCGTTAAGATACATTGATGAGT
JMFN036B20+                                                    TTAAGATACATTGATGAGT
JMFN041L19+                                                CGCGTTAAGATACATTGATGAGT
                      ____________________________________________________________
consensus                                                  CGCGTTAAGATACATTGATGAGT
 
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JMFN044I05+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
JMFN045O01+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
JMFN033M12+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
JMFN010O13+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
JMFN036B20+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
JMFN041L19+           TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
                      ____________________________________________________________
consensus             TTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATG
 
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JMFN044I05+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
JMFN045O01+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
JMFN033M12+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
JMFN010O13+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
JMFN036B20+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
JMFN041L19+           CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
                      ____________________________________________________________
consensus             CTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCA
 
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JMFN044I05+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
JMFN045O01+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
JMFN033M12+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
JMFN010O13+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
JMFN036B20+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
JMFN041L19+           TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
                      ____________________________________________________________
consensus             TTCATTTTATGTTTCAGGTTCAGGGGGAGGTGTGGGAGGTTTTTTAAAGCAAGTAAAACC
 
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JMFN044I05+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
JMFN045O01+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
JMFN033M12+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
JMFN010O13+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
JMFN036B20+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
JMFN041L19+           TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
                      ____________________________________________________________
consensus             TCTACAAATGTGGTATGGCTGATTATGATCATGAACAGACTGTGAGGACTGAGGGGCCTG
 
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JMFN044I05+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
JMFN045O01+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
JMFN033M12+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
JMFN010O13+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
JMFN036B20+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
JMFN041L19+           AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
                      ____________________________________________________________
consensus             AAATGAGCCTTGGGACTGTGAATCTAAAATACACAAACAATTAGAATCAGTAGTTTAACA
 
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JMFN044I05+           CATTATACACTTAAAAATTGGATCT                                   
JMFN045O01+           CATTATACACTTAAAAATTGGATCT                                   
JMFN033M12+           CATTATACACTTAAAAATTGGATCT                                   
JMFN010O13+           CATTATACACTTAAAAATTGGATCT                                   
JMFN036B20+           CATTATACACTTAAAAATTGGATCT                                   
JMFN041L19+           CATTATACACTTAAAAATTGGATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             CATTATACACTTAAAAATTGGATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 
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JMFN041L19+           XXXXXXXXAGTGAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTACCTGGT
                      ____________________________________________________________
consensus             NNNNNNNNAGTGAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTACCTGGT
 
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JMFN041L19+           ACCTTAATTAATTAAGGTACCGGGCCCTACAGATCCTCTTCAGAGATGAGTTTCTGXXXX
                      ____________________________________________________________
consensus             ACCTTAATTAATTAAGGTACCGGGCCCTACAGATCCTCTTCAGAGATGAGTTTCTGNNNN
 
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JMFN041L19+           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCCGGG
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCGGG