Contig 001861:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016E11Sequence595001861 (5)gb|KDP45880.1|2e-33hypothetical protein JCGZ_15324 [Jatropha curcas]800001861 (5)ref|XP_011043824.1|9e-33PREDICTED: squamosa promoter-binding protein 1-like [Populus euphratica]
JMFF019J17Sequence578001861 (5)gb|KDP45880.1|2e-31hypothetical protein JCGZ_15324 [Jatropha curcas]764001861 (5)ref|XP_002317486.2|8e-24hypothetical protein POPTR_0011s11770g [Populus trichocarpa] gb|EEE98098.2| hypo
JMFN040B15Sequence621001861 (5)gb|KDP45880.1|2e-32hypothetical protein JCGZ_15324 [Jatropha curcas]

Alignment

This contig is upended


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rJMFF019J17-                                                               TATTATT
rJMFF016E11-                                                  TTCTTCTGCATTATATTATT
                      ____________________________________________________________
consensus                                                     TTCTTCTGCATTATATTATT
 
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rJMFF019J17-          CAATTCTTGGAAAGGAAAAACATACAGAAGTTGGTGGTATATCTCCATTATCCTAGGATT
rJMFF016E11-          CAATTCTTGGAAAGGAAAAACATACAGAAGTTGGTGGTATATCTCCATTATCCTAGGATT
                      ____________________________________________________________
consensus             CAATTCTTGGAAAGGAAAAACATACAGAAGTTGGTGGTATATCTCCATTATCCTAGGATT
 
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rJMFF019J17-          ATGGATATGTACTATTCCCACAACTAATTACTACGTACTACATACGCTCTAAGTAGCCCA
rJMFF016E11-          ATGGATATGTACTATTCCCACAACTAATTACTACGTACTACATACGCTCTAAGTAGCCCA
                      ____________________________________________________________
consensus             ATGGATATGTACTATTCCCACAACTAATTACTACGTACTACATACGCTCTAAGTAGCCCA
 
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rJMFF019J17-          GTGGTAGTTTCTGGGATGAACAGGACCGGAGATTGCAATCAGAAGAAGGGCGGTACCACG
rJMFF016E11-          GTGGTAGTTTCTGGGATGAACAGGACCGGAGATTGCAATCAGAAGAAGGGCGGTACCACG
                      ____________________________________________________________
consensus             GTGGTAGTTTCTGGGATGAACAGGACCGGAGATTGCAATCAGAAGAAGGGCGGTACCACG
 
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rJMFF019J17-          TTACAGATATTCTAAGATCTCCAAAGTAGCATTCATATAAGTGCGCGCATTTTACATAAG
rJMFF016E11-          TTACAGATATTCTAAGATCTCCAAAGTAGCATTCATATAAGTGCGCGCATTTTACATAAG
                      ____________________________________________________________
consensus             TTACAGATATTCTAAGATCTCCAAAGTAGCATTCATATAAGTGCGCGCATTTTACATAAG
 
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rJMFF019J17-          TTTATGATATAATTGAATTAAGGATGGATGACAGAAGAGAGTAAGCAATAGAGCCGAGGT
rJMFF016E11-          TTTATGATATAATTGAATTAAGGATGGATGACAGAAGAGAGTAAGCAATAGAGCCGAGGT
                      ____________________________________________________________
consensus             TTTATGATATAATTGAATTAAGGATGGATGACAGAAGAGAGTAAGCAATAGAGCCGAGGT
 
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rJMFF019J17-          CAATGAATGTGGAAATTGTCGTAGGAAGAAGTCCCGGCGGCGGAGATGATGAGCTGACTC
rJMFF016E11-          CAATGAATGTGGAAATTGTCGTAGGAAGAAGTCCCGGCGGCGGAGATGATGAGCTGACTC
JMFF016E11+                                                  GCGGAGATGATGAGCTGACTC
JMFN040B15+                                                  GCGGAGATGATGAGCTGACTC
                      ____________________________________________________________
consensus             CAATGAATGTGGAAATTGTCGTAGGAAGAAGTCCCGGCGGCGGAGATGATGAGCTGACTC
 
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rJMFF019J17-          CCTCCACGGCTGCACTGCTTGCTTTCCTGCTTCAATGGAGCCTCTACTCGTCTCCGGCTC
rJMFF016E11-          CCTCCACGGCTGCACTGCTTGCTTTCCTGCTTCAATGGAGCCTCTACTCGTCTCCGGCTC
JMFF016E11+           CCTCCACGGCTGCACTGCTTGCTTTCCTGCTTCAATGGAGCCTCTACTCGTCTCCGGCTC
JMFN040B15+           CCTCCACGGCTGCACTGCTTGCTTTCCTGCTTCAATGGAGCCTCTACTCGTCTCCGGCTC
                      ____________________________________________________________
consensus             CCTCCACGGCTGCACTGCTTGCTTTCCTGCTTCAATGGAGCCTCTACTCGTCTCCGGCTC
 
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rJMFF019J17-          TCACCGCCGCGATTCTCACACGACGACGACGACGACGACGCCTTCCGCCTTCGCTCGTTG
rJMFF016E11-          TCACCGCCGCGATTCTCACACGACGACGACGACGACGACGCCTTCCGCCTTCGCTCGTTG
JMFF016E11+           TCACCGCCGCGATTCTCACACGACGACGACGACGACGACGCCTTCCGCCTTCGCTCGTTG
JMFN040B15+           TCACCGCCGCGATTCTCACACGACGACGACGACGACGCTGCCTTCCGCCTTCGCTCGTTG
                      ____________________________________________________________
consensus             TCACCGCCGCGATTCTCACACGACGACGACGACGACGACGCCTTCCGCCTTCGCTCGTTG
 
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rJMFF019J17-          TGTCCGGCCAGTCTCCTCCGGCAACTCCTCTTTGCATCGTCGAATTCTGACACCTCGTGG
rJMFF016E11-          TGTCCGGCCAGTCTCCTCCGGCAACTCCTCTTTGCATCGTCGAATTCTGACACCTCGTGG
JMFF016E11+           TGTCCGGCCAGTCTCCTCCGGCAACTCCTCTTTGCATCGTCGAATTCTGACACCTCGTGG
JMFN040B15+           TGTCCGGCCAGTCTCCTCCGGCAACTCCTCTTTGCATCGTCGAATTCTGACACCTCGTGG
                      ____________________________________________________________
consensus             TGTCCGGCCAGTCTCCTCCGGCAACTCCTCTTTGCATCGTCGAATTCTGACACCTCGTGG
 
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rJMFF019J17-          AATCTGATGCA                                                 
rJMFF016E11-          AATCTGCTGCATTGCTGGCAGAACCTCTGGTCAACGCCATTGAGCAAGACAGCGGGAGCC
JMFF016E11+           AATCTGCTGCATTGCTGGCAGAACCTCTGGTCAACGCCATTGAGCAAGACAGCGGGAGCC
JMFF019J17+              CTGCTGCATTGCTGGCAGAACCTCTGGTCAACGCCATTGAGCAAGACAGCGGGAGCC
JMFN040B15+           AATCTGCTGCATTGCTGGCAGAACCTCTGGTCAACGCCATTGAGCAAGACAGCGGGAGCC
                      ____________________________________________________________
consensus             AATCTGCTGCATTGCTGGCAGAACCTCTGGTCAACGCCATTGAGCAAGACAGCGGGAGCC
 
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rJMFF016E11-          TTGGCATGGACTTCGCACACTTTGTGCCTCTTGTGGTATGTCTTCGCAAATGTTAAATCT
JMFF016E11+           TTGGCATGGACTTCGCACACTTTGTGCCTCTTGTGGTATGTCTTCGCAAATGTTAAATCT
JMFF019J17+           TTGGCATGGACTTCGCACACTTTGTGCCTCTTGTGGTATGTCTTCGCAAATGTTAAATCT
JMFN040B15+           TTGGCATGGACTTCGCACACTTTGTGCCTCTTGTGGTATGTCTTCGCAAATGTTAAATCT
                      ____________________________________________________________
consensus             TTGGCATGGACTTCGCACACTTTGTGCCTCTTGTGGTATGTCTTCGCAAATGTTAAATCT
 
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rJMFF016E11-          GCGCCGCACTTCTCCACCTGACAGCACGCCGCCGCCGCCGTCACCCCTCCGGCAACACCA
JMFF016E11+           GCGCCGCACTTCTCCACCTGACAGCACGCCGCCGCCGCCGTCACCCCTCCGGCAACACCA
JMFF019J17+           GCGCCGCACTTCTCCACCTGACAGCACGCCGCCGCCGCCGTCACCCCTCCGGCAACACCA
JMFN040B15+           GCGCCGCACTTCTCCACCTGACAGCACGCCGCCGCCGCCGTCACCCCTCCGGCAACACCA
                      ____________________________________________________________
consensus             GCGCCGCACTTCTCCACCTGACAGCACGCCGCCGCCGCCGTCACCCCTCCGGCAACACCA
 
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rJMFF016E11-          CCTGGCGACGACACCTTCTTTCCTAACCCAACATCCATTTTCTTCTTTCTCAA       
JMFF016E11+           CCTGGCGACGACACCTTCTTTCCTAACCCAACATCCATTTTCTTCTTTCTCAAATGACGA
JMFF019J17+           CCTGGCGACGACACCTTCTTTCCTAACCCAACATCCATTTTCTTCTTTCTCAAATGACGA
JMFN040B15+           CCTGGCGACGACACCTTCTTTCCTAACCCAACATCCATTTTCTTCTTTCTCAAATGACGA
                      ____________________________________________________________
consensus             CCTGGCGACGACACCTTCTTTCCTAACCCAACATCCATTTTCTTCTTTCTCAAATGACGA
 
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JMFF016E11+           CACTGATCGTCGTCTTCATTTTCTTCTTCCTCCTCCTCCATCTCATCGTCTTCTTCTTCC
JMFF019J17+           CACTGATCGTCGTCTTCATTTTCTTCTTCCTCCTCCTCCATCTCATCGTCTTCTTCTTCC
JMFN040B15+           CACTGATCGTCGTCTTCATTTTCTTCTTCCTCCTCCTCCATCTCATCGTCTTCTTCTTCC
                      ____________________________________________________________
consensus             CACTGATCGTCGTCTTCATTTTCTTCTTCCTCCTCCTCCATCTCATCGTCTTCTTCTTCC
 
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JMFF016E11+           CCCTCAACTTCTCTCTTTGCCTTCACGGTCGAAGCAAGGCGGCCGCCATGGTTATGGGCC
JMFF019J17+           CCCTCAACTTCTCTCTTTGCCTTCACGGTCGAAGCAAGGCGGCCGCCATGGTTATGGGCC
JMFN040B15+           CCCTCAACTTCTCTCTTTGCCTTCACGGTCGAAGCAAGGCGGCCGCCATGGTTATGGGCC
                      ____________________________________________________________
consensus             CCCTCAACTTCTCTCTTTGCCTTCACGGTCGAAGCAAGGCGGCCGCCATGGTTATGGGCC
 
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JMFF016E11+           TCCATACTCTTGGCGCTTTCCAAGATCGT                               
JMFF019J17+           TCCATACTCTTGGCGCTTTCCAAGATCGT                               
JMFN040B15+           TCCATACTCTTGGCGCTTTCCAAGATCGTGATACTTAGAAACAAGACAGGGGAAATTAAA
                      ____________________________________________________________
consensus             TCCATACTCTTGGCGCTTTCCAAGATCGTGATACTTAGAAACAAGACAGGGGAAATTAAA